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Publications recently added to the Pubs Warehouse

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Genetic structure and diversity in wild populations of the Light-footed Ridgway’s Rail reflect 20 years of augmentation through captive breeding and release

Released April 25, 2025 08:22 EST

2025, Open-File Report 2025-1011

Amy G. Vandergast, Julia G. Smith, Anna Mitelberg, Dustin A. Wood, Kimberley A. Sawyer, Courtney J. Conway

Captive breeding and release programs aimed at recovery of rare species can be informed by genetic data to help select high-diversity source populations, make pairing decisions to minimize inbreeding, and manage release strategies. We developed a set of 54 microsatellite loci to assess genetic structure and diversity across the United States range of the Light-footed Ridgway’s Rail (Rallus obsoletus levipes), a federally endangered marsh bird for which populations have been augmented by a captive breeding program annually since 2001. We identified three regional genetic clusters, with the highest genetic diversity reported in the central cluster, which included all sampled wetlands in north San Diego County. Recent (2019–24) captive-breeding adults all clustered within the northernmost cluster (Orange and Ventura Counties), which was expected given that this cluster included the source wetland for the captive breeding program. Gene flow rates, which approximate the proportions of individuals in a population originating from other populations, were relatively high among clusters (4–24 percent) and may have been enhanced through the release of captive-bred rails. Based on the genetic data analyzed in a genetic rescue decision framework, sourcing new breeding birds from the north San Diego County cluster could provide the greatest genetic diversity benefits. The northernmost cluster, which included Mugu Lagoon and all sampled Orange County wetlands, was considered the most in need of genetic rescue. Recent breeding pairs in the captive breeding program have comparatively low diversity and high interrelatedness. Sourcing birds from wetlands with high genetic diversity and population sizes, assessing genetic relatedness before pairing, and focusing releases in areas that have low estimates of genetic diversity could improve the distribution of genetic diversity across wild populations in the future.

U.S. Geological Survey 2024 Rocky Mountain Region Science Exchange—Showcasing cutting-edge science to adapt to extreme weather events and stakeholder needs

Released April 24, 2025 18:10 EST

2025, Fact Sheet 2025-3008

William J. Andrews, Timothy N. Titus, Lauren Ellissa Eng, Kristine L. Zellman, Patrick J. Anderson, Jeremy C Havens

Introduction

The Rocky Mountains and the Colorado River Basin in the Western United States are complex, interconnected systems that sustain a large variety of species, including tens of millions of humans. These regions face risks from drought, wildfires, invasive plant and animal species, and habitat reduction. Working with many stakeholders, scientists can help to characterize these risks by providing data and analytical tools to inform land and water resource management decisions. 

The U.S. Geological Survey 2024 Rocky Mountain Region (Region 7) Science Exchange Workshop, held in April 2024, focused on cutting-edge science techniques, evaluating complex interconnected risks, and coproducing science with science partners and stakeholders. These science topics and communication strategies can be used for developing data, interpretations, and decision support tools needed to provide science that resource managers and other stakeholders can use to better understand complex, dynamic natural systems and develop management strategies to plan for and adapt to risks that threaten human communities and natural ecosystems.

Statistical approaches for modeling correlated grade and tonnage distributions and applications for mineral resource assessments

Released April 24, 2025 10:32 EST

2025, Applied Computing and Geosciences (26)

Joshua Mark Rosera, Graham W. Lederer, John Schuenemeyer

Correlations between grade and tonnage exist in mineral resource data compiled from published reports, but they are not always addressed during quantitative assessment of undiscovered mineral resources. Failure to account for correlated grade and tonnage distributions can result in geologically unrealistic assessment results. Current software tools simulate univariate ore tonnage and multivariate resource grades of undiscovered deposits independently. As a result, analysts are forced to rely on ad-hoc solutions to minimize the correlation issues by: 1) creating subsets of data with restricted criteria; 2) truncating grade and tonnage distributions; and 3) testing model robustness using exploratory data analysis. While these methods represent pragmatic solutions, the statistical solutions presented here provide additional options to address real correlations in grade and tonnage data used for mineral resource assessments. We present a modified version of the MapMark4 package in R that introduces two alternatives for modeling grade and tonnage distributions, consisting of a multivariate solution that accounts for correlations between ore tonnage and metal grades and an empirical solution that utilizes simple random sampling with replacement to reproduce coupled grades and tonnages from the input data. We present simulations for contained ore and metal for three case studies representing tungsten skarn, komatiite-hosted nickel, and sediment-hosted carbonate amagmatic zinc-lead (Mississippi Valley-type) deposits. Employing the methods presented here yields quantitative mineral resource assessment results that more closely reflect the empirical distributions of grades and tonnages observed in nature and expands the applicability of these tools for ongoing critical mineral resource assessments.

    System characterization report on Resourcesat-2A Linear Imaging Self Scanning-3 sensor

    Released April 23, 2025 12:23 EST

    2025, Open-File Report 2021-1030-T

    Seonkyung Park, Mahesh Shrestha, Minsu Kim, Aparajithan Sampath, Jeffrey Clauson

    Executive Summary 

    This report addresses system characterization of the Indian Space Research Organisation Resourcesat-2A Linear Imaging Self Scanning-3 sensor and is part of a series of system characterization reports produced and delivered by the U.S. Geological Survey Earth Resources Observation and Science Cal/Val Center of Excellence since 2021. These reports present and detail the methodology and procedures for characterization, present technical and operational information about the specific sensing system being evaluated, and provide a summary of test measurements, data retention practices, data analysis results, and conclusions.

    Resourcesat-2A is identical to Resourcesat-2 and was launched in 2016 on the Polar Satellite Launch Vehicle-C36 for continuity of data and improved temporal resolution. The Resourcesat-2 platform (which includes Resourcesat-2A) is of Indian Remote Sensing Satellites-1C/1D–P3 heritage and was built by the Indian Space Research Organisation. Resourcesat-2 and Resourcesat-2A carry the Linear Imaging Self Scanning-3 and Linear Imaging Self Scanning-4 sensors for medium-resolution imaging. More information on Indian Space Research Organisation satellites and sensors is available in the “2022 Joint Agency Commercial Imagery Evaluation—Remote Sensing Satellite Compendium” and from the manufacturer at https://www.isro.gov.in/.

    The Earth Resources Observation and Science Cal/Val Center of Excellence system characterization team completed data analyses to characterize the geometric (interior and exterior), radiometric, and spatial performances.

    To summarize the results, we have determined that this sensor provides an interior geometric performance with mean offsets in the range of 1.75 meters (m; 0.06 pixel) to 6.83 m (0.23 pixel) in easting and −1.83 m (−0.06 pixel) to 1.81 m (0.06 pixel) in northing in band-to-band registration and a root mean square error in the range of 3.81 m (0.13 pixel) to 8.19 m (0.27 pixel) in easting and 2.21 m (0.09 pixel) to 4.72 m (0.16 pixel) in northing.

    We have measured an exterior geometric error offset in the range of −21.29 to 6.88 m in easting and −7.35 to −2.63 m in northing, and the root mean square error is in the range of 7.19 to 21.43 m in easting and 3.64 to 8.19 m in northing in comparison to the Landsat 8 Operational Land Imager.

    The measured radiometric performance was in the range of −0.002 to 0.031 in offset and 0.701 to 0.940 in slope, and the spatial performance was in the range of 1.204 to 1.265 pixels for full width at half maximum with a modulation transfer function at a Nyquist frequency in the range of 0.251 to 0.277.

    The relationship between body condition, body composition, and growth in amphibians

    Released April 23, 2025 10:36 EST

    2025, PLoS ONE (20)

    Ross K. Hinderer, Blake R. Hossack, Lisa A. Eby

    Body condition of animals is often assumed to reflect advantages in survival or reproduction, but body condition indices may not reflect body composition, or condition may be unrelated to fitness-associated traits. The relationship between body condition indices and composition has rarely been quantified in amphibians, and body condition has not previously been related to growth in adult amphibians. We used laboratory (quantitative magnetic resonance) and field methods to evaluate the relationship between body composition and the four common body condition indices for wildlife studies (body mass index, Fulton’s index, scaled mass index, and residual index) in two frog and one salamander species in Montana, USA. We then assessed the relationship between body condition and summertime somatic growth during a 3-yr mark-recapture study of one of our study species (Columbia spotted frogs, Rana luteiventris). Correlation of body condition indices with fat and lean mass differed across species, sexes, and whether components were represented as percentages or were scaled based on size. Scaled mass index, residual index, and Fulton’s index were most often well correlated (r > 0.6) with scaled body components, but Fulton’s index was strongly correlated with body length. Scaled mass and residual indices predicted scaled fat relatively well and were uncorrelated with body length. Heavier condition predicted higher growth rates of Columbia spotted frogs, regardless of the index used. Frogs of heavy body condition (90th percentile residual index) grew 0.04 and 0.05 mm/day greater than frogs of light condition (10th percentile) for average length males and females, respectively. Frogs of short body length (10th percentile) grew 0.11 and 0.19 mm/day more than long (90th percentile) males and females, respectively. By examining the relationship between body condition indices and body composition and revealing a link between condition and future growth, our results provide an empirical basis for choosing the most appropriate condition index, as well as a potential link to fitness-related traits.

    Additional common milkweed would help Canada meet its share of the trinational eastern migratory monarch butterfly recovery target

    Released April 23, 2025 09:52 EST

    2025, Facets (10)

    Greg W. Mitchell, Patrick Kirby, Jason Duffe, Lenore Fahrig, Judith Girard, Mark K. Johnston, Maxim Larrivee, Amanda E. Martin, Iman Momeni-Dehaghi, Jon Pasher, Elizabeth Rezek, Elisabeth Shapiro, Wayne E. Thogmartin, Darren Pouliot

    The eastern migratory monarch butterfly (Danaus plexippus) population has declined by ∼84% between 1993 and 2024. Population recovery in the Midwestern United States is limited by the availability of the monarch's main host plant for egg laying—common milkweed (Asclepias syriaca). The extent to which common milkweed availability is limiting in other breeding regions is unknown. Our objective was to determine whether Canada has enough common milkweed to support its share of the trinational eastern migratory monarch population recovery target, given ∼29 stems of common milkweed are needed to contribute one adult monarch into the fall migratory population. To meet this objective, we estimated the number of common milkweed stems in Canada using published common milkweed availability estimates by land cover type. We also estimated the size of the Canadian monarch population if the recovery target was achieved using published estimates of wintering monarch density in Mexico, fall migration survival rates, and the relative proportion of monarchs entering fall migration from Canada. We estimate that Canada currently has 484 million common milkweed stems (range: 111 million–1 billion stems) and increasing this amount by 1.61 times (i.e., by ∼295 million stems), or equivalently, by 61%, would support the recovery target.

    Integrating climate change, biological invasions, and infectious wildlife diseases

    Released April 23, 2025 08:00 EST

    2025, Frontiers in Ecology and the Environment

    David W. Thieltges, David B. Conn, Ross N. Cuthbert, Alison M. Dunn, Rosa Jolma, M. Camille Hopkins, Volodimir Sarabeev, Sander Smolders, Carol A. Stepien, K. Mathias Wegner, Patrick M. Kočovský

    Climate change is likely to affect infectious diseases that are facilitated by biological invasions, with repercussions for wildlife conservation and zoonotic risks. Current invasion management and policy are underprepared for the future risks associated with such invasion-related wildlife diseases. By considering evidence from bioclimatology, invasion biology, and disease research, we illustrate how climate change is anticipated to affect disease agents (parasites and pathogens), hosts, and vectors across the different stages of invasions. We highlight the opportunity to integrate these disciplines to identify the effects of climate change on invasion related wildlife diseases. In addition, shifting to a proactive stance in implementing management and policy, such as by incorporating climate-change effects either into preventative and mitigation measures for biosecurity or with rapid response protocols to limit disease spread and impacts, could help to combat future ecological, economic, and human health risks stemming from invasion-related wildlife diseases.

    Spatial stream network modeling of water temperature within the White River Basin, Mount Rainier National Park, Washington

    Released April 23, 2025 07:58 EST

    2025, Scientific Investigations Report 2025-5029

    Andrew S. Gendaszek, Anya C. Leach, Kristin L. Jaeger

    Water temperature is a primary control on the occurrence and distribution of fish and other ectothermic aquatic species. In the Pacific Northwest, cold-water species such as Pacific salmon (Oncorhynchus spp.) and bull trout (Salvelinus confluentus) have specific temperature requirements during different life stages that must be met to ensure the viability of their populations. Rivers draining Mount Rainier in western Washington, including the White River along its northern flank, support a number of cold-water fish populations, but the spatial distribution of water temperatures, particularly during late-summer baseflow during August and September, and the climatic, hydrologic, and physical processes regulating it are not well constrained. Spatial stream network (SSN) models, which are generalized linear models that incorporate streamwise spatial autocovariance structures, were fit to mean and 7-day average daily maximum water temperature for August and September for the White River Basin. The SSN models were calibrated using water temperature measurements collected in 2010 through 2020. The extent of the models included the White River and its tributaries upstream from its confluence with Silver Creek in Mount Rainier National Park, Washington. SSN models incorporated covariates hypothesized to represent the climatic, hydrologic, and physical processes that influence water temperature. SSN models were fit to the measured data and compared to generalized linear models that lacked spatial autocovariance structures. Statistically significant covariates within the best-fit models included the proportion of ice cover and forest cover within the basin, mean August air temperature, the proportion of consolidated geologic units, and snow-water equivalent. Statistical models that included spatial autocovariance structures had better predictive performance than those that did not. Additionally, models of mean August and September water temperature had better predictive performance than those of 7-day average daily maximum temperature in August and September. Predictions of the spatial distribution of water temperature were similar between August and September with a general warming in the downstream part of the mainstem White River compared to cooler water temperatures in the high-elevation headwater streams. The proportion of ice cover emerged as an inversely related significant covariate to both mean August and September water temperature because streams that receive glacial meltwater are colder than non-glaciated streams. Water temperatures of the upper White River increased downstream and are attributed to warming of water temperature from accumulated solar radiation and inflow of non-glaciated tributaries. Estimated water temperatures for the upper White River model are 3–4 degrees Celsius (°C) warmer for tributaries, but 1–2 °C cooler for the mainstem compared to the regional-scale model. Differences between the upper White River SSN model and the regional-scale NorWeST model are attributed to the fact that the upper White River SSN included water temperature observations specific to the upper White River, whereas water temperature observations from lower elevation streams and downstream from the Mount Rainer National Park boundary were used in the regional scale model.

    Hydrogeologic framework and considerations for drilling and grouting of closed-loop geothermal bores in the Erie-Ontario Lowlands and Allegheny Plateau of New York State

    Released April 22, 2025 08:00 EST

    2025, Open-File Report 2025-1013

    John H. Williams, William M. Kappel, Joshua C. Woda

    The hydrogeologic framework at closed-loop geothermal sites in the Erie-Ontario Lowlands and Allegheny Plateau of central and western New York is the result of the complex interaction of bedrock geology, glacial geology, and groundwater hydrology, and the occurrence of petroleum and gas. Considerations for closed-loop geothermal bore installation include the thickness and character of glacial deposits, bedrock solubility and depth to competent rock, karst development, the distribution of highly permeable zones and their hydraulic heads, and the presence of saline water, gas, and oil. The hydrogeology of the Erie-Ontario Lowlands and Allegheny Plateau poses challenges to closed-loop geothermal bore drilling and casing; managing drill cuttings, discharge water, and gas; and grouting. The potential to encounter severe challenges typically increases with bore depth. This report highlights hydrogeologic considerations for closed-loop geothermal bore installation in New York’s Erie-Ontario Lowlands and Allegheny Plateau to help guide the efficient and safe development of geothermal resources in the regions.

    Groundwater budget for the surficial aquifer surrounding Lake Nokomis, Minneapolis, Minnesota

    Released April 21, 2025 13:44 EST

    2025, Open-File Report 2025-1021

    Colin T. Livdahl

    During prolonged periods of above-average precipitation, rising groundwater levels have the potential to cause damage to and interfere with underground infrastructure and building foundations. To understand the relations between precipitation and groundwater in the vicinity of Lake Nokomis, the U.S. Geological Survey, in collaboration with the University of Minnesota, quantified five components of the groundwater budget: groundwater recharge, change in surficial aquifer storage, surficial aquifer groundwater discharge to Lake Nokomis, groundwater evapotranspiration, and groundwater discharge to underlying bedrock aquifers. Field data, geologic records, and empirical calculation methods were used to quantify groundwater budget components for April 2023 through April 2024. Lake water budget data indicate that Lake Nokomis is a flowthrough system during periods with no outflow through the weir, with groundwater inputs equal to outputs. Roughly 40 percent of precipitation that fell in the study area was added to the surficial aquifer as recharge. Uncertainty in the vertical hydraulic conductivity resulted in wide-ranging estimates (spanning three orders of magnitude) of water discharging from the surficial aquifer to the underlying bedrock aquifer. Drought conditions persisted for the duration of this study and were not representative of the conditions that motivated this study. This study is a start towards understanding relations between precipitation, Lake Nokomis levels, and groundwater levels that could affect local underground infrastructure.

    USGS Environmental Health Program—Per- and polyfluoroalkyl substances (PFAS) science activities [postcard]

    Released April 21, 2025 13:20 EST

    2025, General Information Product 251

    Deborah Iwanowicz

    Introduction  

    The U.S. Geological Survey (USGS) Environmental Health Program conducts various activities related to PFAS (per- and polyfluoroalkyl substances) to understand their impacts on human health and the environment. Through these activities, the program aims to provide critical information and resources to address the challenges posed by PFAS contamination.

    Simulated effects of future water availability and protected species habitat in a perennial wetland, Santa Barbara County, California

    Released April 21, 2025 11:18 EST

    2025, Water (17)

    Geoffrey Cromwell, Daniel Philip Culling, Matthew J. Young, Joshua Larsen

    This study evaluates the potential water availability in Barka Slough and the effects of changing hydrological conditions on the aquatic habitat of five protected species. Barka Slough is a historically perennial wetland at the downstream western end of the San Antonio Creek Valley watershed (SACVW). A previously published hydrologic model of the SACVW for 1948–2018 was extended to include 2019–2021 and then modified to simulate the future years of 2022–2051. Two models simulating the future years of 2022–2051 were constructed, each with different climate inputs: (1) a repeated historical climate and (2) a 2070-centered Drier Extreme Warming climate (2070 DEW). The model with the 2070 DEW climate had warmer temperatures and an increase in average annual precipitation driven by larger, albeit more infrequent, precipitation events than the model with the historical climate. Simulated groundwater pumpage resulted in cumulative groundwater storage depletion and groundwater-level decline in Barka Slough in both future models. The simulations indicate that Barka Slough may transition from a perennial to an ephemeral wetland. Streamflow, stream disconnection, and depth to groundwater are key habitat metrics for federally listed species in Barka Slough. Future seasonal conditions for each metric are more likely to affect federally listed species’ habitats under 2070 DEW climatic conditions. Future seasonal streamflow volume may negatively impact unarmored threespine stickleback (Gasterosteus aculeatus williamsoni) and tidewater goby (Eucyclogobis newberryi) habitats. Future seasonal stream disconnection may negatively impact the unarmored threespine stickleback habitat. Future groundwater-level decline may negatively impact Gambel’s watercress (Nasturtium gambelii) and La Graciosa thistle (Cirsium scariosum var. loncholepis) habitats and could influence the ability to use Barka Slough as a restoration or reintroduction site for these species. Results from this study can be used to inform water management decisions to sustain future groundwater availability in the SACVW.

    Mahi-mahi metacouplings: Quantifying human–nature interactions in dolphinfish (Coryphaena hippurus) fisheries

    Released April 21, 2025 11:01 EST

    2025, Global Sustainability

    Andrew Kenneth Carlson

    Fisheries encompass humans and fish, but fisheries researchers rarely model human–nature interactions over space and time. I filled this information gap for dolphinfish (Coryphaena hippurus), a popular, widely distributed species that supports industrial, artisanal, recreational, and subsistence fisheries. Dolphinfish human–nature interactions showed a long-term up-and-down pattern in 1950–2019. Recent declines in catch mirror decreases in abundance and size that have been observed in parts of the species’ range. This research provides a robust perspective on the recreational, economic, cultural, and nutritional significance of dolphinfish while creating an approach for evaluating human–nature interactions in fisheries worldwide.

    Comparative properties of saponitic fault gouge and serpentinite muds cored from mud volcanoes of the Mariana subduction zone

    Released April 21, 2025 08:46 EST

    2025, Geophysics, Geochemistry, Geosystems (26)

    Diane E. Moore, C.A. Morrow, David A. Lockner, Barbara A. Bekins

    We obtained 12 core samples for physical and chemical characterization from three serpentinite mud volcanoes (Yinazao, Asùt Tesoru, and Fantangisña) located on the forearc of the Mariana subduction system, that were drilled during International Ocean Discovery Program Expedition 366. Two samples from the Fantangisña mud volcano are interpreted to be clay-rich fault gouges derived from the subduction channel. Their bulk compositions are intermediate between the serpentinites and oceanic basalts. The oceanic crustal materials in the gouges have been thoroughly metasomatized and the serpentinites extensively altered to the trioctahedral, Mg-rich smectite clays saponite and corrensite. The only relict phases in clasts of crustal rock are accessory Ti- and P-bearing minerals. The two fault gouge samples have lower frictional strengths (μ < 0.2) than the serpentinites (μ = 0.2–0.4), and their measured permeabilities are also somewhat lower. Their physical and compositional properties correspond to saponitic gouges from other faults that juxtapose serpentinite against crustal rocks, in particular gouges from the two creeping traces of the San Andreas Fault recovered in the core from the San Andreas Fault Observatory at Depth. The décollement beneath Fantangisña mud volcano is thus expected to be very weak and likely characterized by stable slip.

    Landsat surface product validation instrumentation: The BigMAC exercise

    Released April 19, 2025 11:52 EST

    2025, Sensors (25)

    Dennis Helder, Mahesh Shrestha, Joshua J. Mann, Emily Maddox, Jeffrey Irwin, Larry Leigh, Aaron Gerace, Rehman Eon, Lucy Falcon, David Conran, Nina G. Raqueno, Timothy Bauch, Christopher Durell, Brandon Russell

    Users of Earth remotely sensed optical imagery are increasingly demanding a surface reflectance or surface temperature product instead of the top-of-atmosphere products that have been produced historically. Validating the accuracy of surface products remains a difficult task since it involves assessment across a range of atmospheric profiles, as well as many different land surface types. Thus, standard approaches from the satellite calibration community do not apply and new technologies need to be developed. The Big Multi-Agency Campaign (BigMAC) was developed to assess current technologies that might be used for validation of surface products derived from satellite imagery, with emphasis on Landsat. Conducted in August, 2021, in Brookings, SD, USA, a variety of measurement technologies were fielded and assessed for accuracy, precision, and deployability. Each technology exhibited its strengths and weaknesses. Handheld spectroradiometers are capable of surface reflectance measurements with accuracies in the 0.01 - 0.02 absolute reflectance units, but are expensive to deploy. Unmanned Aircraft System (UAS)-based radiometers have the potential of making measurements with similar accuracy, but are also difficult to deploy. Mirror-based empirical line methods showed improving accuracy potential, but deployment also remains an issue. However, there are inexpensive radiometers designed for long-term autonomous use that exhibited good accuracy and precision, as well as being easy to deploy. Thermal measurement technologies showed accuracy potential in the 1 - 2K range, and some easily deployable instruments are available. Results from BigMAC indicate there are technologies available today to begin making operational surface reflectance/temperature measurements and strong potential for improvements in the future.

    The demise of an icehouse: Calibrating the end of the LPIA

    Released April 19, 2025 11:46 EST

    2025, Global and Planetary Change

    Neil Patrick Griffis, Roland Mundil, Isabel Montañez, Pierre Dietrich, Daniel Le Heron, Roberto Iannuzzi, Bastien Linol, Thammy Mottin, John Richey, Christoph Kettler

    Earth has experienced three complete icehouse-greenhouse turnovers in the Phanerozoic, with the Late Paleozoic Ice Age (LPIA) recognized as the last and most extreme icehouse. The nature, scale and dynamics of the LPIA are characterized by periods of intense glaciation, which are often interrupted by short-lived (1–2 Myrs) intervals associated with ice-free or distal from ice conditions. In this study, we focus on constraining the icehouse-greenhouse turnover across southcentral Gondwana (SCG) reporting new high-resolution Usingle bondPb zircon CA-ID-TIMS ages from immediate postglacial facies in the Kalahari and Karoo basins. We integrate these ages with published Usingle bondPb zircon CA-ID-TIMS ages (n = 20) to build a stratigraphic framework for SCG, to investigate the duration and nature of the demise of the LPIA. We confirm the stepwise deglaciation of Gondwana over a ca. 20 Myr period, with deglaciation occurring first in the Paraná Basin at ca. 300 Ma and in the Karoo Basin by 282 Ma. Low-latitude marine carbonates deposited contemporaneously with the final demise of ice is characterized by a major shift towards isotopically depleted δ13C and δ18O values. We interpret the perturbations in stable isotopes records to be driven by either mantle outgassing or the release of methane and the addition of glacial melt water to the paleo-ocean during warming. The presented stratigraphic framework is built in intracratonic basins, far from any syn- tectonic affects, suggesting a largely climatic driver behind deglaciation events.

    Microbiome data management in action workshop: Atlanta, GA, USA, June 12–13, 2024

    Released April 19, 2025 09:59 EST

    2025, Environmental Microbiome (20)

    Julia Kelliher, Mashael Aljumaah, Sarah R. Bordenstein, J. Rodney Brister, Patrick Chain, JosePablo Dunduore-Arias, Joanne B. Emerson, Vanessa Moreira C. Ferdandes, Roberto Flores, Antonio Gonzalez, Zoe A. Hansen, Eneida L. Hatcher, Scott A. Jackson, Christina A. Kellogg, Ramana Madupu, Cassandra Maria Luz Miller, Chloe Mirzayi, Emmanuel F. Mongodin, Ahmed M. Moustafa, Chris Mungall, Aaron Oliver, Nonia Pariente, Jennifer Pett-Ridge, Sydne Record, Linta Reji, Anna-Louise Reysenbach, Virginia Rich, Lorna Richardson, Lynn M. Schriml, Reed S. Shabman, Maria Sierra, Matthew Sullivan, Punithavathi Sundaramurthy, K.M. Thibault, Luke R. Thompson, Scott W. Tighe, Ethell Vereen, Emiley A. Eloe-Fadrosh

    Microbiome research is revolutionizing human and environmental health, but the value and reuse of microbiome data are significantly hampered by the limited development and adoption of data standards. While several ongoing efforts are aimed at improving microbiome data management, significant gaps still remain in terms of defining and promoting adoption of consensus standards for these datasets. The Strengthening the Organization and Reporting of Microbiome Studies (STORMS) guidelines for human microbiome research have been endorsed and successfully utilized by many research organizations, publishers, and funding agencies, and have been recognized as a consensus community standard. No equivalent effort has occurred for environmental, synthetic, and non-human host-associated microbiomes. To address this growing need within the microbiome research community, we convened the Microbiome Data Management in Action Workshop (June 12–13, 2024, in Atlanta, GA, USA), to bring together key decision makers in microbiome science including researchers, publishers, funders, and data repositories. The 50 attendees, representing the diverse and interdisciplinary nature of microbiome research, discussed recent progress and challenges, and brainstormed actionable recommendations and paths forward for coordinated environmental microbiome data management and the modifications necessary for the STORMS guidelines to be applied to environmental, non-human host, and synthetic microbiomes. The outcomes of this workshop will form the basis of a formalized data management roadmap to be implemented across the field. These best practices will drive scientific innovation now and in years to come as these data continue to be used not only in targeted reanalyses but in large-scale models and machine learning efforts.

    Cardiac and behavioral responses to chemical and electrical immobilization in Lake Trout

    Released April 19, 2025 08:43 EST

    2025, Transactions of the American Fisheries Society

    Tyler Reid Funnell, Thomas R. Binder, Christopher S. Vandergoot

    Objective

    Immobilizing or anesthetizing fish is important for promoting fish welfare in numerous routine activities that involve handling. Electroanesthesia, an alternative to traditional chemical anesthetics, uses weak electrical current to immobilize fish while current is applied, resulting in near-immediate induction and recovery. The physiological effects of electroanesthesia appear to be minimal or comparable to those of chemical anesthetics, but knowledge gaps exist on cardiac responses during treatment and behavioral responses in a controlled setting.

    Methods

    Lake Trout Salvelinus namaycush were immobilized by one of four treatments: control (physical restraint); eugenol (AQUI-S 20E); and continuously applied, low-voltage electroanesthesia with either constant DC or transcutaneous electrical nerve stimulation (TENS). We evaluated the heart rate while fish were immobilized, reflexes at 1 h posttreatment, and survival and movements in a laboratory setting over a 6-d posttreatment period.

    Results

    The heart rates of fish immobilized with either electroanesthesia treatment (constant DC: mean ± SE = 12.6 ± 1.1 beats/min; TENS: 13.1 ± 1.2 beats/min) were not significantly different from those of control fish (10.0 ± 1.2 beats/min) while immobilized. However, fish immobilized with eugenol exhibited heart rates that were more than three times higher (32.1 ± 1.2 beats/min) than those of control fish while immobilized. Treatments had no effect on reflex scores at 1 h posttreatment, the 6-d survival rate of fish (100%), or movement behavior during the hours (1–24 h) or days (6 d) after treatment.

    Conclusions

    This study adds to a growing body of research finding a lack of negative physiological or behavioral responses resulting from continuously applied electroanesthesia, suggesting that it is at least as safe as many chemical anesthetics in this respect. The significant cardiac response of Lake Trout while immobilized with eugenol warrants further investigation. While the body of research on immobilizing agents in fish grows, species-specific data remain sparse, and users would benefit from pilot testing before wider application.

    A framework for understanding the effects of subsurface agricultural drainage on downstream flows

    Released April 17, 2025 15:29 EST

    2025, Scientific Investigations Report 2025-5023

    Hannah L. Podzorski, Karen R. Ryberg

    Understanding controls on streamflow volume and magnitude is important to water resource management applications, such as critical water and transportation structure design and floodplain mapping. Changes in land use and agricultural practices, such as subsurface agricultural drainage, may be contributing to changes in streamflow characteristics. Subsurface agricultural drainage, also known as tile drainage, is the practice of installing drains in the subsurface of agricultural fields to improve productivity. Because of the complex interactions between subsurface drainage systems, precipitation, local soil conditions, and land management practices, it is difficult to determine how subsurface agricultural drainage affects downstream flow. Previously developed subsurface agricultural drainage conceptual models under dry, saturated, and winter conditions are summarized, and current literature on the effects of subsurface agricultural drainage on downstream flows, focusing on peak flow, non-event flow, and total flow to develop frameworks for discussing these systems is compiled.

    The effects that subsurface drainage has on hydrologic systems are expected to vary by site and are seasonally based on system design, soil type, moisture conditions, precipitation characteristics, and land conditions. Subsurface drainage can affect the magnitude of peak flow by converting surface runoff from a storm event to subsurface runoff. By increasing hydrologic connectivity of a catchment, subsurface drainage can increase non-event flow or the flow between two storm events, typically dependent on lateral flow through the subsurface and groundwater. Theoretically, by diverting water from groundwater recharge or by reducing water available for evapotranspiration, subsurface drainage may increase the total volume of flow. Precipitation changes may increase infiltration, excess overland flow, and flood risk regardless of the presence or absence of subsurface drainage.

    Assessment of undiscovered conventional and continuous oil and gas resources in the Escondido, Olmos, and San Miguel Formations of the Western Gulf Basin Province, U.S. Gulf Coast region, 2023

    Released April 16, 2025 11:45 EST

    2025, Fact Sheet 2025-3015

    William H. Craddock, John W. Counts, Colin A. Doolan, Marc L. Buursink, Celeste D. Lohr, Javin J. Hatcherian, Katherine L. French, Jared T. Gooley, Phuong A. Le, Tracey J. Mercier, Cheryl A. Woodall, Christopher J. Schenk

    Using a geology-based assessment methodology, the U.S. Geological Survey estimated undiscovered, technically recoverable mean resources of 5 million barrels of oil and 25 billion cubic feet of gas in conventional reservoirs and 361 million barrels of oil and 10,978 billion cubic feet of gas in continuous reservoirs in the Western Gulf Basin Province of the U.S. Gulf Coast region.

    Altitude of the potentiometric surface and depth to water in the Mississippi River Valley alluvial aquifer, spring 2022

    Released April 16, 2025 10:12 EST

    2025, Scientific Investigations Map 3532

    Virginia L. McGuire, Kellan R. Strauch, Erik A. Wojtylko, William H. Asquith, Anna M. Nottmeier, Judith C. Thomas, Roland W. Tollett, Wade H. Kress

    Potentiometric-surface and depth-to-water maps for spring 2022 were created for the Mississippi River Valley alluvial aquifer (MRVA) using groundwater-altitude data from 1,136 wells completed in the MRVA and from the altitude of the top of the water surface in area rivers from 160 streamgages. The potentiometric-surface and depth-to-water maps for 2022 were created to support investigations to characterize the MRVA as part of the U.S. Geological Survey Water Availability and Use Science Program. Sufficient data were available to map the potentiometric surface and depth to water of the MRVA for spring 2022 for about 83 percent of the aquifer area. The potentiometric contours ranged from 0 to 340 feet (ft) above the North American Vertical Datum of 1988. The regional direction of groundwater gradient was generally to the south-southwest, except in areas of groundwater-altitude depressions, where the groundwater gradient was into the depression, and near rivers, where the groundwater gradient can be from aquifer to the river or from the river into the aquifer. There are large depressions in the potentiometric-surface map in the lower one-half of the Cache region and in much of the Grand Prairie and Delta regions. Depth to water in the MRVA, spring 2022, by well ranged from 5.00 ft above land surface to 145.66 ft below land surface.

    Evaluation of alternative coatings for U.S. Geological Survey water-quality samplers

    Released April 16, 2025 09:55 EST

    2025, Open-File Report 2025-1016

    Alyssa M. Thornton

    Each year, U.S. Geological Survey (USGS) personnel collect approximately 52,000 water-quality samples from rivers and streams across the United States. Several samplers are used by the USGS for water-quality sample collection in riverine environments. These samplers are coated with Plasti Dip to protect the exterior of the sampler; however, Plasti Dip is susceptible to fraying and wear, requiring maintenance. Alternative coatings were tested to determine if a different coating is better suited for the samplers. The alternative coatings included Raptor, powder coating, and DuraCoat; a fifth option was bare metal. Samplers with different coatings were evaluated based on initial coating application, equipment blank samples, a controlled wear test, blank sample collection with worn samplers, maintenance and re-coating of samplers, and field-use and wear tracking. The powder-coated sampler proved to be the top performer overall in the study.

    Gaps in water quality modeling of hydrologic systems

    Released April 16, 2025 09:41 EST

    2025, Water (17)

    Lisa Lucas, Craig J. Brown, Dale M. Robertson, Nancy T. Baker, Zachary Johnson, Christopher Green, Se Jong Cho, Melinda L. Erickson, Allen C. Gellis, Jeramy Roland Jasmann, Noah Knowles, Andreas Prein, Paul Stackelberg

    This review assesses gaps in water quality modeling, emphasizing opportunities to improve next-generation models that are essential for managing water quality and are integral to meeting goals of scientific and management agencies. In particular, this paper identifies gaps in water quality modeling capabilities that, if addressed, could support assessments, projections, and evaluations of management alternatives to support ecosystem health and human beneficial use of water resources. It covers surface water and groundwater quality modeling, dealing with a broad suite of physical, biogeochemical, and anthropogenic drivers. Modeling capabilities for six constituents (or constituent categories) are explored: water temperature, salinity, nutrients, sediment, geogenic constituents, and contaminants of emerging concern. Each constituent was followed through the coupled atmospheric-hydrologic-human system, with prominent modeling gaps described for a diverse array of relevant inputs, processes, and human activities. Commonly identified modeling gaps primarily fall under three types: (1) model gaps, (2) data gaps, and (3) process understanding gaps. In addition to potential solutions for addressing specific individual modeling limitations, some broad approaches (e.g., enhanced data collection and compilation, machine learning, reduced-complexity modeling) are discussed as ways forward for tackling multiple gaps. This gap analysis establishes a framework of diverse approaches that may support improved process representation, scale, and accuracy of models for a wide range of water quality issues.

    Development of species-specific primers for the identification of Atlantic and shortnose sturgeons

    Released April 16, 2025 08:01 EST

    2025, Conservation Genetics Resources

    Miluska Olivera Hyde, David C. Kazyak

    Atlantic (Acipenser oxyrinchus oxyrinchus) and shortnose sturgeon (Acipenser brevirostrum) are broadly distributed along the Atlantic Coast of North America, where they use rivers, estuaries, and coastal habitats. In order to support management under the U.S. Endangered Species Act, it is important to understand when and where these fish occur. However, this presents a challenge as the two taxa are sometimes misidentified and some life stages (e.g., eggs) are challenging to identify with confidence. In this study, we used cytochrome b sequences to develop molecular primers to confirm the identity of shortnose and Atlantic sturgeon samples. We tested these primers using reference DNA samples for these two species. The results suggested that the primers were able to positively identify and distinguish Atlantic and shortnose sturgeon. The accuracy of the Atlantic sturgeon primers was 95.34%, whereas the accuracy of the shortnose sturgeon primers was 90.7%. Even though there were some individuals that were not positively identified as their corresponding species (false negatives), we did not observe any false positives. Our paper does not aim to develop eDNA markers; rather, the objective of our study was to create species-specific, unlabeled, and cost-effective primers which can be amplified using conventional PCR. The amplification product can be observed in a 2% agarose gel run through electrophoresis. This entire procedure is relatively inexpensive and involves basic instruments found in most conservation genetics laboratories.

    Anomalous shear stress variation in wet granular medium: Implications for landslide lateral faults

    Released April 16, 2025 07:55 EST

    2025, Geophysical Research Letters (52)

    Chengrui Chang, Kohei Ono, William Schulz, Tetsuo Yamaguchi

    Landslide assessments typically focus on the mechanical properties of the basal shear zone, but lateral faults are frequently overlooked, possibly due to their lower normal stresses and variably saturated conditions. Using double-cylinder shear experiments on wet granular systems as analogs for landslide lateral faults, we observe anomalous shear stress variations with fluid volume fractions, defying an expected unimodal relationship associated with capillary cohesion. At low fluid volume fractions, shear strength weakens as the wet grain assembly experiences reduced lateral pressure and increased boundary slip. This boundary slip subsequently vanishes, with an abrupt strengthening due to the dilation of the grain assembly against fluid surface tension as saturation approaches. Strike-slip motion and confinement in this system explain the strength anomaly, highlighting a critical role of lateral faults in landslide stability, particularly in cases where dynamics cannot be adequately explained by monitored pore-water pressure or basal friction.

    Estimation of baseflow and flooding characteristics for East Canyon Creek, Summit and Morgan Counties, Utah

    Released April 16, 2025 07:09 EST

    2025, Scientific Investigations Report 2025-5003

    Jonathan Casey Root, Christine A. Rumsey

    An improved understanding of hydrologic responses to changing climatic conditions is needed to better inform water management practices. East Canyon Creek, a perennial, snowmelt-dominated stream in the Wasatch Mountains of northern Utah, is subjected to increasing development and demands on water in the Snyderville Basin and adjacent areas. In this study, streamflow and specific conductance measured at three U.S. Geological Survey streamgages on East Canyon Creek were used to estimate daily baseflow for water years 2011–22. Trends in these estimates and correlations with climate data from two Natural Resource Conservation Service snow telemetry (SNOTEL) stations within the Snyderville Basin above East Canyon Reservoir, were quantified and reported. Peak annual streamflow also was assessed for flood potential on the study reach of East Canyon Creek. The hydrograph separations showed consistent baseflow indices among all sites, with a larger baseflow component during the fall–spring period (September–April; baseflow indices approximately equal to [≈] 0.751–0.835) and smaller component during the summer period (May–August; baseflow indices ≈ 0.428–0.532). In-stream specific conductance during spring (February–April) was influenced by road salt application, limiting the utility of the hydrograph separation approach. Annual streamflow and climate data were evaluated for trends using the nonparametric Mann–Kendall test, with inconclusive results. Related tests for trends, the Seasonal and Regional Kendall tests, were used to evaluate data at monthly timesteps and indicated a decreasing trend in total streamflow and baseflow at all streamgages. The rank-based Kendall’s tau test for correlation was used to measure the ordinal association with climatic data at co-located SNOTEL stations. Total streamflow and baseflow were strongly correlated with precipitation and snow-water equivalent. By incorporating a predictive regression model, the nonparametric Theil–Sen line, these correlations could support the development of streamflow forecast models using climate data from SNOTEL stations. Such models would provide water managers with tools to help make proactive decisions, such as reservoir or water reclamation releases and curtailment of withdrawals, in response to regional drought or varying snowpack and spring runoff in a given year.

    Relative abundance, seasonal occurrence, and distribution of marine birds in the northern Gulf of Mexico

    Released April 15, 2025 10:32 EST

    2025, Marine Ornithology: Journal of Seabird Research and Conservation (53) 189-206

    J. Christopher Haney, Pamela E. Michael, Jeffery S. Gleason, Randy Wilson, Yvan G. Satgé, Kathy M. Hixson, Patrick Jodice

    Marine birds in the U.S. Gulf of Mexico have long been poorly studied. Given statutory obligations to protect migratory birds and endangered species, three broad-scale vessel and aerial programs initiated since 2010 have now surveyed the entire northern Gulf. Vessel coverage alone exceeds 700 d and 74,000 km of observer effort using 300-m strip transects. We supplemented these survey data with earlier, smaller-scale studies, eBird checklists, literature reviews, and other less accessible sources to create snapshot summaries of relative abundance, seasonal occurrence, and regional distribution for 117 taxa of marine and water birds reported from the northern Gulf (113 of which were substantiated with physical evidence). Using taxonomic and functional criteria, we identified 56 taxa characteristic of open shelf, slope, and pelagic waters (federal jurisdiction), 41 taxa with primarily coastal affinities (state and federal jurisdiction), and 20 taxa of sea and diving ducks. High species richness of marine birds in the northern Gulf is attributed to (1) a temperate-to-tropical gradient facilitating diverse marine environments year-round; (2) varied geographic origins of marine bird species using the Gulf; and (3) a mostly enclosed sea basin acting as a vagrant trap for wide-ranging species. Our taxonomic list and status updates seek to bridge information gaps for marine birds now subject to accelerated commercial uses of this region's continental shelf, including newly proposed offshore wind energy development. Other applications include guiding risk and vulnerability assessments of Gulf marine birds, providing core content for seabird observer training, and prioritizing environmental impact reviews and monitoring programs in offshore energy construction and operations plans.

    Volcanic gases reflect magma stalling and launching depths

    Released April 15, 2025 09:51 EST

    2025, Earth and Planetary Science Letters (660)

    Shuo Ding, Terry Plank, J. Maarten de Moor, Yves Moussallam, Maryjo Brounce, Peter J. Kelly

    Many open-vent arc volcanoes display two modes in their continuous gas emissions, one with a characteristic CO2/ ST ratio typical of periods of quiescent degassing and another punctuated by high CO2/ ST gas emitted in the weeks before eruption, a recently recognized eruption precursor. In this study we explore the origin of the two modes of degassing revealed by time-series gas data at Turrialba volcano (Costa Rica) in the context of new melt inclusion (MI) data. To reconstruct the c[CO2] of undegassed magma, we developed a rapid-quench piston-cylinder assembly to rehomogenize the vapor bubble commonly contained in MIs. We focus on olivine-hosted MIs from a mafic scoria sample erupted from Turrialba in 1864–1866. The reconstructed CO2 contents in MIs decrease from ∼4000 to <1000 ppmw as S contents decrease from 3500 to <1000 ppmw. The highest reconstructed S and CO2 in the MIs resulted in an initial magmatic CO2/ ST ratio (molar) of 0.83. Informed by the MI data, we modeled the decompression degassing of Turrialba magma and vapor composition using the Sulfur_X and EVo models. Instead of being controlled by initial magmatic CO2/ST ratio as suggested by previous studies, we find that the quiescent gas emitted from Turrialba during 2014–2018 (CO2/ ST = 2.3 ± 0.8, molar) appears to reflectequilibrium with magmas stored at 4–8 km (Sulfur_X) or 2 km (EVo) depth, when H2O is degassing extensively from the magma. A magma storage region at 4–8 km is also supported by seismic tomography. The second gas mode is noted by spikes in CO2/ ST ∼ 7.9 ± 2 in the weeks prior to eruption. This gas reflects equilibrium with a magma at 12–18 km (Sulfur_X) or 4–8 km (EVo), where the ascending magma is saturated with a CO2-rich vapor. Thus, there are two important trans crustal depths beneath the volcano: one where the rate of H2O loss from the magma and thus magma viscosity increases, and one at greater depths where high CO2/ST vapor forms and may facilitate dike propagation. We interpret the shallower, H2O-loss region as the main site of magma stalling and storage, where quiescent gas is generated continuously. We interpret the greater depth (12–18 km) as the source of the precursory gas that precedes eruption, and where the mafic melt lastly equilibrated with a mush zone before ascending and triggering eruption weeks later. This hypothesis is ripe for testing at other volcanoes that exhibit two modes in gas geochemistry.

    RIce-Net: Integrating ground-based cameras and machine learning for automated river ice detection

    Released April 15, 2025 09:45 EST

    2025, Environmental Engineering & Software (190)

    Mahmoud Ayyad, Marouane Temini, Mohamed Abdelkader, Moheb Henein, Frank Engel, R. Russell Lotspeich, Jack R. Eggleston

    River ice plays a critical role in controlling streamflow in cold regions. The U.S. Geological Survey (USGS) qualifies affected water-level measurements and inferred streamflow by ice conditions at a date later than the day of the actual measurements. This study introduces a novel computer vision-based framework, River Ice-Network (RIce-Net), that uses the USGS nationwide network of ground-based cameras whose images are published through the National Imagery Management System (NIMS). RIce-Net consists of a binary classifier to identify ice-affected images that are segmented to calculate the fraction of ice coverage, which is used to automatically generate a near real-time ice flag. RIce-Net was trained using images from selected NIMS stations collected in 2023 and tested using images collected in 2024. Also, the framework’s scalability and transferability were tested over another station that was not included in the training process. RIce-Net ice flags are well-aligned with those reported by USGS.

    From hydrated silica to quartz: Potential hydrothermal precipitates found in Jezero crater, Mars

    Released April 15, 2025 08:25 EST

    2025, Earth and Planetary Science Letters (656)

    P.S.A. Beck, O. Beyssac, E. Dehouck, S. Bernard, M. Pineau, L. Mandon, C. Royer, E. Clave, S. Schroder, O. Forni, R. Francis, N. Mangold, C.C. Bedford, A.P. Broz, E.A. Cloutis, J.R. Johnson, F. Poulet, T. Fouchet, C. Quantin-Nataf, C. Pilorget, W. Rapin, P.-Y. Meslin, Travis S.J. Gabriel, G. Arana, J.M. Madariaga, A.J. Brown, S. Maurice, S.M. Clegg, O. Gasnault, A. Cousin, R.C. Wiens, The SuperCam Team

    On Earth, silica-rich phases from opal to quartz are important indicators and tracers of geological processes. Hydrated silica, such as opal, is a particularly good matrix for the preservation of molecular and macroscopic biosignatures. Cherts, a type of silica-dominated rocks, provide a unique archive of ancient terrestrial life while quartz is the emblematic mineral of the Earth's continental crust. On Mars, hydrated silica has been detected in several locations based on remote sensing and rover-based studies. In the present article we report on the detection of cobbles made of hydrated silica (opal or chalcedony), as well as well-crystallized quartz. These detections were made with the SuperCam instrument onboard Perseverance (Mars 2020 mission), using a combination of LIBS, infrared and Raman spectroscopy. Quartz-dominated stones are detected unambiguously for the first time on the Martian surface, and based on grain size and crystallinity are proposed to be of hydrothermal origin. Although these rocks were all found as float, we propose that these detections are part of a common hydrothermal system, and represent different depths / temperatures of precipitation. This attests that hydrothermal processes were active in and around Jezero crater, possibly triggered by the Jezero crater-forming impact. These silica-rich rocks, in particular opaline silica, are very promising targets for sampling and return to Earth given their high biosignature preservation potential.

    Effects of chronic metal exposure and metamorphosis on the microbiomes of larval and adult insects and riparian spiders through the aquatic-riparian food web

    Released April 15, 2025 08:10 EST

    2025, Environmental Pollution (371)

    Brittany G. Perrotta, Karen A. Kidd, Amy M. Marcarelli, Gordon Paterson, David Walters

    The macroinvertebrate microbiome controls various aspects of the host's physiology, from regulation of environmental contaminants to reproductive output. Aquatic insects provide critical nutritional subsidies linking aquatic and riparian food webs while simultaneously serving as a contaminant pathway for riparian insectivores in polluted ecosystems. Previous studies have characterized the transport and transfer of contaminants from aquatic to riparian ecosystems through insect metamorphosis, but both contaminant exposure and metamorphosis are energetically intensive processes that may cause host microbiomes to undergo radical transformation in structure and function, potentially affecting the host's physiology. We collected arthropods from three sites within Torch Lake, a historical copper mine in the Keweenaw Peninsula, Michigan, USA, and three sites within a nearby reference lake. Our objectives were to: 1) characterize the variation in microbiome communities and predicted metagenomic functions with legacy copper mining activity across space, among host types and family-level host taxonomy, 2) characterize how insect metamorphosis alters the microbiome community, including the degree of endosymbiotic infection, and predicted metagenomic function. We field-collected organisms, extracted their DNA, and sequenced the 16S region of the rRNA gene to characterize microbiome communities, then predicted metagenomic function. Site, lake, and host taxonomy affected the host microbiome community composition. Copper exposure increased the abundance of xenobiotic and lipid metabolism pathways in the Araneidae spider microbiome. Insect metamorphosis reduced the alpha diversity, altered the community composition, and predicted metagenomic function. We observed a bioconcentration of endosymbiotic bacteria in adult insects, especially holometabolous insects. Through metamorphosis, we observed a transition in function from xenobiotic degradation pathways to carbohydrate metabolism. Overall, contaminant exposure alters the microbiome composition in aquatic insects and riparian spiders and alters the function of the microbiome across the aquatic-riparian interface. Furthermore, metamorphosis is a critical element in shaping the aquatic insect microbiome across its life history.

    Characterizing Meteor Crater impact melts through geochemistry and textural analysis

    Released April 14, 2025 15:15 EST

    2025, Open-File Report 2024-1062

    Amber L. Gullikson, Tenielle A. Gaither, Justin J. Hagerty

    The U.S. Geological Survey Astrogeology Science Center houses the Meteor Crater sample collection, an assemblage of over 2,500 meters of cuttings from 161 drill holes into Meteor Crater’s rim, flanks, and ejecta blanket. We have utilized this unique collection to study the composition and spatial distribution of impact-generated materials from within the ejecta blanket. Meteor Crater has historically been known to have generated only a relatively small amount of impact melt compared to other terrestrial craters of similar size. A detailed compositional and textural dataset of impact-derived melts from this impact can therefore be a useful asset in improving our understanding of crater formation, and in particular impact melt formation.

    We have characterized 42 impact-melt particles from Meteor Crater using a scanning electron microscope and an electron microprobe for textural and compositional analysis. We analyzed samples from six drill holes in the ejecta blanket, situated to the northwest, southeast, south, and southwest of the crater (ejecta northeast of the crater is devoid of impact melts). Impact melts were collected from drill cuttings at various depths within the ejecta blanket, ranging from a few centimeters below the surface down to ~6.5 meters.

    Backscattered electron (BSE) images were acquired for each analyzed impact-melt particle. To characterize the various textures and phases present in each impact melt, we also took many detailed BSE images. Our geochemical analyses include full spectral profiles using energy dispersive X-ray spectrometry and well-calibrated wavelength dispersive spectrometry for a number of phases, including minerals (olivine, pyroxene, and so on), pristine glass, and metallic inclusions. The full dataset is available in ScienceBase as a data release (Gullikson and others, 2024), accessible at https://doi.org/10.5066/P9OGAJ8P.

    Our goal for this Open-File Report is to provide a summary of this immense dataset, details on data collection, descriptions of the different phases observed within impact-melt particles (both geochemically and texturally), and observable trends.

    Potential water-quality and hydrology stressors on freshwater mussels with development of environmental DNA assays for selected mussels and macroinvertebrates in Big Darby Creek Basin, Ohio, 2020–22

    Released April 14, 2025 12:55 EST

    2025, Scientific Investigations Report 2025-5005

    Carrie A. Huitger, G.F. Koltun, Erin A. Stelzer, Lauren D. Lynch

    The richness and abundance of freshwater mussels in the Big Darby Creek Basin has declined in recent decades, according to survey results published by the Ohio Biological Survey. In October 2016, a major mussel die-off of undetermined cause reportedly affected over 50 miles of Big Darby Creek; however, fishes and other wildlife were not noticeably impacted. Pollution, habitat destruction, climate change, and hydrologic modification have all been theorized as potential reasons for the widespread declines in freshwater mussel populations in North America. To better understand potential stressors to mussels and other aquatic organisms in the Big Darby Creek Basin, the U.S. Geological Survey, in cooperation with the Ohio Water Development Authority, evaluated water quality and temporal changes in hydrology at selected locations. In addition, environmental deoxyribonucleic acid (eDNA) quantitative polymerase chain reaction (qPCR) assays were developed to detect the presence of selected mussels and macroinvertebrates using stream water.

    Time-weighted average concentrations of pesticides, organic wastewater compounds (OWCs), and polycyclic aromatic hydrocarbons (PAHs) were determined for selected locations within the Big Darby Creek Basin. Passive samplers designed to mimic the respiratory exposure of aquatic organisms and the bioconcentration of organic contaminants into their fatty tissues were deployed three times annually at three sites within the Big Darby Creek Basin in 2020 and 2021. Analyses were done for 204 pesticide compounds, 38 OWCs, and 33 PAHs. Of the 204 pesticide compounds, 70 were detected in at least one sample; 30 were detected in all samples. Herbicides and herbicide degradates were the pesticides most frequently detected and also had some of the highest concentrations of the pesticides detected in this study. Three herbicides (atrazine, ametryn, and metribuzin) were detected in at least 88 percent of samples and two fungicides (azoxystrobin and propiconazole) were detected in all samples. Of the 38 OWCs, 24 were detected in at least one sample; however, only one (N,N-diethyltoluamide [DEET]) was detected in all samples. Of the 33 PAHs, 29 were detected in at least one sample; 12 were detected in all samples.

    A continuous water-quality monitor was operated seasonally on Big Darby Creek above Georgesville, Ohio, from 2020 to 2022. Dissolved oxygen concentrations generally followed a daily cycle, peaking in early evening and troughing around sunrise. There were occasional 24-hour swings in dissolved oxygen concentration that had a range exceeding 10 milligrams per liter. However, dissolved oxygen concentrations never fell below Ohio’s aquatic life criteria for warmwater habitats (outside of mixing zones) of 4.0 milligrams per liter as an instantaneous minimum and 5.0 milligrams per liter as a minimum 24-hour average. The Ohio water-quality criteria for temperatures are 29.4 degrees Celsius as an instantaneous maximum and 27.8 degrees Celsius as a 24-hour average maximum. In 2020, there were 10 days when the maximum instantaneous value for temperature was exceeded and 3 consecutive days when the maximum 24-hour average temperature was exceeded.

    Streamflow time-series data from three gaging stations within the Big Darby Creek Basin were evaluated for trends in annual flow statistics and daily nonexceedance probabilities over time. In general, the evaluation of streamflow conditions at the Big Darby Creek gage (with 97 years of record) indicated that streamflow changed between water years 1922 and 2021. During that time span, flows in general increased, the number of high-flow pulses became more frequent, and low-flow pulses and extreme low-flow periods became less frequent. The only strong indication of trends over time in annual flow statistics for the relatively short records for the other two gages (on Little Darby Creek, with 25 years of record, and Hellbranch Run, with 29 years of record) was that as time went on, reversals between rising and falling periods became more frequent.

    The U.S. Geological Survey Ohio Water Microbiology Laboratory developed eDNA qPCR assays to detect Epioblasma rangiana (northern riffleshell mussels), Chimarra obscura (a species of caddisfly), Maccaffertium pulchellum (a species of mayfly), and optimized a preexisting eDNA qPCR assay to detect for Ptychobranchus fasciolaris (kidneyshell mussels). The assays were validated by using environmental sampling methods. Assay sensitivity was established by determining the limits of detection and quantification. Water samples were collected at 12 sites in the Big Darby Creek Basin between 2020 and 2022 and analyzed for eDNA with the qPCR assays developed for this study.

    Data gap analysis for estimation of agricultural return flows in the Upper Gunnison River Basin, Colorado

    Released April 14, 2025 12:45 EST

    2025, Open-File Report 2025-1009

    Rachel G. Gidley, Quinn M. Miller, Wayne R. Belcher

    The Gunnison River and many tributaries in the Upper Gunnison River Basin provide water to irrigate agricultural crops. The application of irrigation water can recharge some aquifers locally by water percolating below the root zone and eventually flowing back to the stream or river through the subsurface. Diverting surface water for irrigation reduces streamflow during the irrigation season but can provide temporary storage of water and supplement streamflow after the snowmelt runoff season. Understanding the timing and quantity of agricultural return flows could help resource managers make informed decisions and adapt to potential changes in water management and availability that could affect irrigation practices. In 2024, the U.S. Geological Survey, in cooperation with the Upper Gunnison River Water Conservancy District, began a study to characterize agricultural return flows in the Upper Gunnison River Basin by using endmember mixing analysis and developing a groundwater model. Both approaches require data from multiple sources, but data gaps exist in the East River study reach and other reaches of interest (Ohio Creek, Tomichi Creek, and Cochetopa Creek). The East River Basin, which is the initial focus of the study, has fewer data gaps than the other basins. Data gaps could be addressed by installing additional surface water and groundwater monitoring sites, making regular streamflow measurements on tributaries, and completing tests to characterize local aquifer properties.

    Lead exposure in waterfowl before contoxic shot requirements: A nationwide study, 1983−1986

    Released April 14, 2025 11:40 EST

    2025, Journal of Fish and Wildlife Management

    J. Christian Franson, Christine M. Bunck

    Before implementing nontoxic shot requirements for hunting waterfowl and American coots Fulica americana in the United States in 1991, the U.S. Fish and Wildlife Service monitored lead poisoning in waterfowl on federal and state wildlife hunting areas during 1983-1986. Federal and state collaborators collected gizzards and livers from 9,029 hunter-killed waterfowl (10 species of dabbling ducks Anatinae, 9 diving ducks Aythyinae, 5 geese Anserinae, and tundra swans Cygnus columbianus) across the four flyways. At the U.S. Fish and Wildlife Service National Wildlife Health Center, Madison, Wisconsin, waterfowl gizzards were examined for ingested lead and nontoxic shot and livers were analyzed for lead concentrations. Diving ducks had the greatest frequency (8.7%) of one or more ingested lead shot, followed by dabbling ducks (5.5%) and geese (1.3%). No ingested shot were found in tundra swans. The frequency of elevated (≥ 2.0 mg/kg wet weight) liver lead concentrations was also greatest in diving ducks, followed by dabbling ducks and geese. Within each species group, the frequency of elevated liver lead concentrations was greater than ingested lead shot, an indication that lead shot ingestion alone underrepresents lead exposure. Thus, lead in the liver may remain elevated after the erosion and excretion of lead pellets from the gizzard. Our results provide historical baseline data and summarize a nationwide study of lead exposure, using both ingested lead shot and liver lead concentrations, in waterfowl in the United States before the implementation of nontoxic shot regulations in 1991. These data can be compared with previous studies of lead exposure in waterfowl, as well as current and future assessments to evaluate the success of nontoxic shot regulations nationwide and specifically within previously sampled waterfowl management areas.

    Solution-collapse breccia pipe uranium deposits of the southern Colorado Plateau, northwestern Arizona, USA

    Released April 14, 2025 09:58 EST

    2025, Ore Geology Reviews (181)

    Bradley S. Van Gosen, Susan Hall, Craig A. Johnson, William Benzel

    Some of the highest-grade uranium deposits in the United States occur in breccia pipes that formed by solution and collapse of sedimentary strata, which occur in the southern portion of the Colorado Plateau in northwestern Arizona. The host breccia pipes are up to 1200 m in vertical extent, average about 90 m in diameter, and can cross-cut strata from their base in the Mississippian Redwall Limestone to as stratigraphically high on some plateaus as the Triassic Chinle Formation. These uranium-base metal deposits are up to 600 m thick and formed within the breccia pipes where they transect the Permian Coconino Sandstone, Hermit Formation, and the Esplanade Sandstone. Of the hundreds of breccia pipes identified across this region, only a small percentage are known to contain mineralization. The main uranium ore mineral is uraninite that is intergrown with at least 20 base-metal sulfide minerals, which contribute Fe, Cu, Co, As, Pb, Zn, Ni, and Ag to the deposits.
    This study considered regional stratigraphy, sulfur isotope systematics, mineralogy, in situ dating, and compilation and analysis of previous work on the deposits. A comprehensive deposit model has not been published for these deposits. This analysis identified new additions to update the deposit model for these unusual, possibly unique deposits. Proposed modifications to the model include: (1) the source, mechanisms, timing of the base-metal sulfide mineral assemblages, and (2) the source, mechanism, and timing of the uranium mineralization. Sulfide and uranium deposition are shown to be separate mineralization events. The study proposes the possible role of gypsum as a source of sulfur for the sulfide minerals in the deposits. Groundwaters carrying uranium encountered the preexisting sulfides in breccia pipes, reducing the uranyl ions, and precipitating U oxide (as uraninite). Analysis of the regional stratigraphy recognized that numerous beds of gypsum are in the strata that lie only tens of meters above the breccia pipe deposits. In the breccia pipe region, if these stratigraphic units (Toroweap and Kaibab Formations) do not contain gypsum layers then the underlying pipes are not mineralized; where these Permian gypsum layers do occur, breccia pipes can host mineralization. This new understanding should be useful in identifying the prospective region for mineralized pipes.

    Tapwater exposures, residential risk, and mitigation in a PFAS-impacted-groundwater community

    Released April 14, 2025 08:13 EST

    2025, Environmental Science: Processes and Impacts

    Paul M. Bradley, Kristin M. Romanok, Kelly Smalling, Lee Donahue, Mark P. Gaikowski, Randy K. Hines, Sara E. Breitmeyer, Stephanie Gordon, Keith Loftin, R. Blaine McCleskey, Shannon M. Meppelink, Molly L. Schreiner

    Tapwater (TW) safety and sustainability are priorities in the United States. Per/polyfluoroalkyl substance(s) (PFAS) contamination is a growing public-health concern due to prolific use, widespread TW exposures, and mounting human-health concerns. Historically-rural, actively-urbanizing communities that rely on surficial-aquifer private wells incur elevated risks of unrecognized TW exposures, including PFAS, due to limited private-well monitoring and contaminant-source proliferation in urbanizing landscapes. Here, a broad-analytical-scope TW-assessment was conducted in a hydrologically-vulnerable, Mississippi River alluvial-island community, where PFAS contamination of the shallow-alluvial drinking-water aquifer has been documented, but more comprehensive contaminant characterization to inform decision-making is currently lacking. In 2021, we analyzed 510 organics, 34 inorganics, and 3 microbial groups in 11 residential and community locations to assess (1) TW risks beyond recognized PFAS issues, (2) day-to-day and year-to-year risk variability, and (3) suitability of the underlying sandstone aquifer as an alternative source to mitigate TW-PFAS exposures. Seventy-six organics and 25 inorganics were detected. Potential human-health risks of detected TW exposures were explored based on cumulative benchmark-based toxicity quotients (TQ). Elevated risks (TQ ≥ 1) from organic and inorganic contaminants were observed in all alluvial-aquifer-sourced synoptic samples but not in sandstone-aquifer-sourced samples. Repeated sampling at 3 sites over 52–55 h indicated limited variability in risk over the short-term. Comparable PFAS-specific TQ for spatial-synoptic, short-term (3 days) temporal, and long-term (3 years quarterly) temporal samples indicated that synoptic results provided useful insight into the risks of TW-PFAS exposures at French Island over the long-term. No PFAS detections in sandstone-aquifer-sourced samples over a 3 year period indicated no PFAS-associated risk and supported the sandstone aquifer as an alternative drinking-water source to mitigate community TW-PFAS exposures. This study illustrated the importance of expanded contaminant monitoring of private-well TW, beyond known concerns (in this case, PFAS), to reduce the risks of a range of unrecognized contaminant exposures.

    Suspended sediment and bedload transport along the Main and South Branches, Wild Rice River, northwestern Minnesota, 1979 through 2023

    Released April 14, 2025 07:17 EST

    2025, Open-File Report 2025-1008

    Joel T. Groten, Sara B. Levin, Gerald G. Storey, Erin N. Coenen, Jim D. Blount, J. William Lund, David J. Brannon

    The geologic history and anthropogenic modifications of Minnesota’s Wild Rice River have caused major morphological adjustments, which induce erosion and excess fluvial sediment transport. The excess sediment deposits in the lower Wild Rice River, exacerbating flooding. To help mitigate these problems, the Wild Rice Watershed District has future plans to implement a river restoration on the lower Wild Rice River. The Wild Rice Watershed District collaborated with the U.S. Geological Survey to measure and analyze sediment transport along the Wild Rice River’s Main and South Branches to assess any potential changes in sediment transport among sites and time periods. Time differencing results indicated that all suspended-sediment constituents showed a significant difference between the two sampling periods at one South Branch site but not at the Main Branch site. Piecewise regression analysis better matched the suspended-sediment constituents transport process at most sites by differentiating no relation between suspended-sediment constituents at lower streamflows and a positive relation at higher streamflows at most Wild Rice River sites. Five of the sites showed elevated sediment transport with increasing streamflow. In contrast, the site farthest downstream showed a negative relation with increasing streamflow, indicating that that the lower Wild Rice River is supply limited and deposition is likely occurring upstream and (or) near the site. Overall, the uncertainty in results indicates the complexity of sediment transport in a river when using streamflow as the sole explanatory variable and suggests a need for multisite, multiyear, and multifaceted data.

    Ecological thresholds and transformations due to climate change: The role of abiotic stress

    Released April 13, 2025 11:28 EST

    2025, Ecosphere (16)

    Michael Osland, John B. Bradford, Lauren Toth, Matthew Germino, James Grace, Judith Z. Drexler, Camille Stagg, Eric E. Grossman, Karen M. Thorne, Stephanie Romanach, Davina Passeri, Gregory Noe, Jessica R. Lacy, Ken Krauss, Kurt P. Kowalski, Glenn R. Guntenspergen, Neil K. Ganju, Nicholas Enwright, Joel A. Carr, Kristin B. Byrd, Kevin Buffington

    An ecological threshold is the point at which a comparatively small environmental change triggers an abrupt and disproportionately large ecological response. In the face of accelerating climate change, there is concern that abrupt ecosystem transformations will become more widespread as critical ecological thresholds are crossed. There has been ongoing debate, however, regarding the prevalence of ecological thresholds across the natural world. While ecological thresholds are ubiquitous in some ecosystems, thresholds have been difficult to detect in others. Some studies have even concluded that threshold responses are uncommon in the natural world and overly emphasized in the ecological literature. As ecologists who work in ecosystems chronically exposed to high abiotic stress, we consider ecological thresholds and ecosystem transformations to be critical concepts that can greatly advance understanding of ecological responses to climate change and inform ecosystem management. But quantifying ecological thresholds can be challenging, if not impossible, without data that are strategically collected for that purpose. Here, we present a conceptual framework built upon linkages between abiotic stress, climate-driven ecological threshold responses, and the risk of ecosystem transformation. We also present a simple approach for quantifying ecological thresholds across abiotic stress gradients. We hypothesize that climate-driven threshold responses are especially influential in ecosystems chronically exposed to high abiotic stress, where autotroph diversity is low and foundation species play a prominent ecological role. Abiotic conditions in these environments are often near physiological tolerance limits of foundation species, which means that small abiotic changes can trigger landscape-level ecological transformations. Conversely, the alleviation of stress near thresholds can allow foundation species to thrive and spread into previously inhospitable locations. We provide examples of this climate-driven threshold behavior from four high-stress environments: coastal wetlands, coral reefs, drylands, and alpine ecosystems. Our overarching aim in this review is to clarify the strong relationships between abiotic stress, climate-driven ecological thresholds, and the risk of ecosystem transformation under climate change.

    River floods under wetter antecedent conditions deliver coarser sediment to the coast

    Released April 13, 2025 10:05 EST

    2025, Geophysical Research Letters (52)

    Amy E. East, Alexander G. Snyder, Andrew W. Stevens, Jonathan Warrick, David Topping, Matthew A. Thomas, Andrew C. Ritchie

    Increasing hydrologic volatility—more extreme rain, and larger variations between wet and dry years—has become apparent in some regions, but few data exist to determine how intensifying hydrologic extremes affect sedimentary systems. Using uniquely high-resolution records of fluvial suspended sediment and coastal morphology, we quantify sedimentary responses from a steep, 357-km2 watershed in California under extreme wet and dry hydrologic conditions. In years with multiple 2- to 10-year floods, fluvial sediment coarsened significantly as the wet season progressed, with late-season floods delivering dominantly sand-sized material to the coast. Greater and coarser sediment supply under wetter antecedent conditions affected nearshore geomorphic evolution for 4–5 years. The watershed and coastal changes we documented point to an increasing role of sediment-related hazards (flooding and hillslope erosion) and resources (nearshore accretion) as wet seasons intensify.

    Development of a genotyping-in-thousands by sequencing (GT-seq) panel for identifying individuals and estimating relatedness among Alaska black bears (Ursus americanus)

    Released April 11, 2025 09:30 EST

    2025, Ecology and Evolution (15)

    Eleni Leto Petrou, Colette D. Brandt, Timothy J. Spivey, Kristen M. Gruenthal, Cherie Marie McKeeman, Sean D. Farley, David Battle, Cory Stantorf, Andrew M. Ramey

    The management and conservation of large mammals, such as black bears (Ursus americanus), have long been informed by genetic estimates of population size and individual dispersal. Amplicon sequencing methods, also known as ‘genotyping-in-thousands-by sequencing’ (GT-seq), now enable the efficient and cost-effective genotyping of hundreds of loci and individuals in the same sequencing run. Here, we develop a GT-seq panel for individual identification and kinship inference in Alaska black bears. Using genomic data from restriction site-associated DNA sequencing of hunter-harvested bears from Southcentral Alaska (n = 85), we identified 170 microhaplotype and single nucleotide polymorphism (SNP) loci that were highly heterozygous in local populations. To enable sexing of individuals, we also included a previously published sex-linked locus in the GT-seq panel. We empirically validated the GT-seq panel using samples collected at different spatial scales. These samples included tissues (n = 82) obtained from bears within a small geographic area in Anchorage, Alaska, which were likely to be relatives as well as the hunter-harvested samples collected from geographically widespread locations throughout Southcentral Alaska. Empirical validation indicated high genotyping success and genotype reproducibility across replicate subsamples. Computer simulations demonstrated that the GT-seq panel had ample statistical power for distinguishing distinct individuals and first-order relatives (parent-offspring and full-sibling pairs) from unrelated individuals. As a final proof of concept, the panel was used to identify individual bears and close kin sampled from urban and wild habitats in Anchorage, Alaska. We anticipate that the GT-seq panel will be a useful genomic resource for the monitoring and management of Alaska black bear populations.ons.

    Managing for tomorrow—A climate adaptation decision framework

    Released April 11, 2025 06:43 EST

    2025, Open-File Report 2025-1005

    Kristen L. Bouska, Joshua Booker, Suzi Clark, John Delaney, Josh Eash, Max Post van der Burg, Heidi Roop

    Climate change presents new and compounding challenges to natural resource management. With changing climate patterns, managers are confronted with difficult decisions on how to minimize climate effects on habitats, infrastructure, and wildlife populations. To support climate adaptation decision making, we first conceptualized an approach that integrates the principles of the resist–accept–direct framework, climate scenario planning, and decision analysis into a general framework to support adaptation planning. This framework was implemented and refined by working with three National Wildlife Refuge System refuges within the Midwest Region. The objectives of this report are to describe the climate adaptation decision framework and provide guidance for how to apply the framework to support transparent, consistent, and decision-focused adaptation planning. We include a workbook to support the application of each step of the framework as well as lessons learned from our experiences developing the framework. The climate adaptation decision framework has wide applicability to aid adaptation planning within natural resource management and underscores the important role of engaging interest groups in climate adaptation decisions.

    Benthic habitat map of Olowalu Reef, Maui, Hawaii—Geomorphological structure, biological cover, and geologic zonation determined with spectral, lidar, and acoustic data

    Released April 10, 2025 14:01 EST

    2025, Open-File Report 2025-1010

    Liana N. Heberer, Kristen A. Alkins, Curt D. Storlazzi, Susan A. Cochran, Ann E. Gibbs, Russell Sparks, Kristy Stone, Itana Silva, Tatiana Martinez, Cole Peralto, Arielle S. Levine, Douglas Stow, Jillian Maloney

    The fringing coral reef off Olowalu, Maui, Hawaii, has been identified as a local conservation priority site. In 2007, the National Oceanic and Atmospheric Administration (NOAA) produced a benthic habitat map of the Hawaiian Islands that was used as a foundation for this study. To support place-based management of the reef in the future, the U.S. Geological Survey (USGS) mapped the geologic zone, major and dominant geomorphological structure, biological cover type, and percent of biological cover for 11 square kilometers (km2) of Olowalu Reef at a minimum mapping unit (MMU) of 100 square meters (m2) to create a benthic habitat map. Heads-up digitization was employed on 0.50-meter (m) natural color satellite orthoimagery with ancillary 1-m acoustic backscatter imagery from single-scan sonar (sound navigation and ranging). A 1-m, 4-m, and 8-m digital bathymetric model (DBM) was interpolated from bathymetric lidar (light detection and ranging), and various geomorphometric layers derived from the DBMs were used for habitat interpretation. Still-frame imagery of the seafloor extracted from vessel-towed underwater video transects on Olowalu Reef served as ground validation points (n=870) during active mapping and accuracy assessment points (n=216) for thematic accuracy assessment. Thematic accuracy was cross-validated by the Hawai‘i Department of Land and Natural Resources Division of Aquatic Resources. Final thematic accuracy was 88.8 percent for major structure, 85.6 percent for dominant structure, 86.0 percent for major biological cover, and 78.6 percent for type and percent of major biological cover. Reef and hardbottom constituted 52 percent of the total mapped habitat, comprising mostly aggregate reef (31 percent) and pavement (11 percent), with large swaths of spur-and-groove (9 percent). Of this hardbottom, 17 percent was covered with moderate (10 to <50 percent) coral and 27 percent with high coral cover (50 to <90 percent). High (50 to <90 percent) macroalgae cover dominated the continuous sand sheets in offshore bank/shelf zones.

    The map created in this study supplements the NOAA 2007 map and expands on the observations made by USGS sampling of the reef. The NOAA 2007 map and our map differed in total areal extent by a negligible 6 m2 and were in general thematic agreement. Our map is intended to serve as a baseline for public access, general research, local-level management, and reef change for future studies.

    Insect pollinator crossing of international border barriers along the U.S.-Mexico border

    Released April 10, 2025 10:40 EST

    2025, Ecological Indicators (174)

    Beth Middleton

    Infrastructure along the U.S.-Mexico Border may not be equally permeable to all types of insect pollinators with potential implications for pollen and gene flow between plant populations. Pollinators were observed on their approach to two types of border barriers (slatted and cemented) along the U.S.-Mexico Border from March 2023 to January 2024. Near the barrier, four insect behaviors were observed including 1) flying over the barrier, 2) crossing through the slats of the barrier, 3) not crossing the barrier, or 4) flying parallel to the barrier without crossing. Overall, 90.2% of the pollinators crossed the barrier. Butterflies were most often observed flying over the barrier (86.8%) or sometimes moving through the slats in the barrier (6.8%). It was more common for moths to crawl through the slats than to fly over the barrier based on the occurrence model. On windy days, both butterflies and moths sometimes flew parallel to the barrier without crossing (1.2% and 27.3%, respectively), although moth crossing behavior was not related to the abundance model. Butterfly abundance increased in higher temperatures and decreased in higher wind speeds. Other insect pollinators were also observed (bee, skipper, wasp) but their crossing behavior was not significantly related to the model. Because pollinators support endangered plant species, strategies to facilitate their barrier crossing could support plant conservation in South Texas.

    Identifying preferential flow from soil moisture time series: Review of methodologies

    Released April 10, 2025 09:14 EST

    2025, Vadose Zone Journal (24)

    John R. Nimmo, Inge Wiekenkamp, Ryoko Araki, Jannis Groh, Nitin Singh, Octavia Crompton, Briana Wyatt, Hoori Ajami, Daniel Gimenez, Daniel Hirmas, Pamela Sullivan, Matthias Sprenger

    Identifying and quantifying preferential flow (PF) through soil—the rapid movement of water through spatially-distinct pathways in the subsurface—is vital to understanding how the hydrologic cycle responds to climate, land cover, and anthropogenic changes. In recent decades, methods have been developed that use measured soil moisture time series to identify PF. Because they allow for continuous monitoring and are relatively easy to implement, these methods have become an important tool for recognizing when, where, and under what conditions PF occurs. The methods seek to identify a pattern or quantification that indicates the occurrence of PF. Most commonly, the chosen signature is either (1) a nonsequential response to infiltrated water, in which soil moisture responses do not occur in order of shallowest to deepest, or (2) a velocity criterion, in which newly infiltrated water is detected at depth earlier than is possible by nonpreferential flow processes. Alternative signatures have also been developed that have certain advantages but are less commonly utilized. Choosing among these possible signatures requires attention to their pertinent characteristics, including susceptibility to errors, possible bias toward false negatives or false positives, reliance on subjective judgments, and possible requirements for additional types of data. We review 77 studies that have applied such methods, to highlight important information for readers who want to identify PF from soil moisture data, and to inform those who aim to develop new methods or improve existing ones.

    Costs of land treatments on public lands in the western United States

    Released April 10, 2025 08:05 EST

    2025, Rangeland Ecology & Management (100) 99-110

    James Meldrum, Christopher Huber, Adrian P. Monroe, Bryan C. Tarbox, Michelle Jeffries, David Pilliod, Cameron L. Aldridge

    Public land managers often conduct rehabilitation and restoration actions to achieve desired conditions or specific natural resource objectives. These “land treatments” include a variety of techniques, such as biomass removal or manipulation, seeding, and herbicide application. Limited information exists on the costs of conducting many common types of land treatments, but such information can be paired with treatment effectiveness data to prioritize application of limited resources where they may have the greatest benefit and improve efficiency. Here, we investigated cost information recorded in the Land Treatment Digital Library, a catalog of legacy land treatment information on public lands managed by the U.S. Department of the Interior's Bureau of Land Management. Based on 1,701 treatment records across eleven western U.S. states, we developed empirical per-acre cost estimates for representative land treatments in eight categories: three seeding categories (aerial seeding, drill seeding, and seedling planting), prescribed burning, soil disturbance, soil stabilization, vegetation disturbance, and weed control. We evaluated spatio-temporal factors that may be associated with variation in treatment costs and found strong evidence for nonlinear decreases in per-acre costs as treatment areas increased and that per-acre treatment costs have increased in real terms in recent decades. We also found evidence that per-acre costs for drill seeding, prescribed burns, and soil stabilization increased with the average slope of the terrain of a treated area and that per-acre costs for prescribed burns, seedling planting, and soil stabilization were influenced by distance to urban areas or major roads. These results can inform planning, prioritization, and assessment of common land treatments on public lands in the western United States, in particular supporting greater consideration of costs and cost effectiveness.

    Geochemistry and radiogenic isotopes constrain the mantle source region of the Mountain Pass Intrusive Suite, California

    Released April 10, 2025 07:58 EST

    2025, LITHOS (508-509)

    Erin Kay Benson, Kathryn E. Watts, Ian William Hillenbrand

    The Mountain Pass carbonatite stock is the largest rare earth element (REE) deposit and only active REE mine in the United States. The carbonatite intrusion and spatially associated alkaline silicate intrusions constitute the Mountain Pass Intrusive Suite, which is located within the Mojave Province in California. Both the carbonatite and the alkaline silicate rocks are enriched in large ion lithophile elements and light REEs, and less enriched to depleted in high field strength elements, indicating the mantle source region was metasomatically enriched in incompatible trace elements. The cause of this metasomatic mantle enrichment and the genetic relationship between the carbonatite and the alkaline silicate stocks are poorly understood. In this study, major and trace element geochemical data and isotopic (Rb-Sr, Sm-Nd, and Lu-Hf) data are presented to constrain genesis of the Mountain Pass Intrusive Suite, from mantle source region to the intrusion of the stocks. Our geochemical data are consistent with derivation of the alkaline silicate and carbonatite melts through partial melting from a shared mantle source region rather than through liquid immiscibility or fractional crystallization and separation of a carbothermal fluid. Although the Rb-Sr isotopic system in the Mountain Pass Intrusive Suite is disturbed at the whole-rock scale, the isotopic systems for whole-rock Sm-Nd (εNdi =  ‐2.2 ± 0.8) and zircon Lu-Hf (εHfi = 0.1 ± 1.1) are robust and support mantle derivation of the magmas. Geochemical modeling using experimentally derived partition coefficients was used to identify possible causes of enrichment in incompatible elements through metasomatism in the mantle source region. Modeling of metasomatism by melts derived by partial melting of deeply subducted carbonated sediments approximates observed Mountain Pass Intrusive Suite trace element chemistry. Scattered εHfi in inherited zircon (2.8 ± 2.6) is consistent with derivation from an arc-related environment with substantial crustal contamination. Paleotectonic studies in the Mojave Province indicate that regional subduction preceded emplacement of the Mountain Pass Intrusive Suite by ∼300 Ma. Melting of the Mountain Pass source region may have been caused by post-collisional thermal relaxation and extension.

    Assessment of undiscovered oil and gas resources of the Los Angeles Basin Province, 2023

    Released April 09, 2025 11:40 EST

    2025, Fact Sheet 2024-3051

    Christopher J. Schenk, Marilyn E. Tennyson, Tracey J. Mercier, Phuong A. Le, Andrea D. Cicero, Ronald M. Drake II, Sarah E. Gelman, Jane S. Hearon, Benjamin G. Johnson, Jenny H. Lagesse, Heidi M. Leathers-Miller, Kira K. Timm

    Using a geology-based assessment methodology, the U.S. Geological Survey estimated undiscovered, technically recoverable mean resources of 61 million barrels of oil and 240 billion cubic feet of gas in the Los Angeles Basin Province.

    The mountains are calling, but will visitors go? Modeling the effect of weather and air quality on visitation to Pacific Northwest parks and protected areas using mobile device data

    Released April 09, 2025 10:55 EST

    2025, PLOS Climate (4)

    Kira Minehart, Ashley D'Antonio, Emily J. Wilkins

    We investigated how visitors to federal, state, and local parks and protected areas (PPAs) respond to weather and air quality conditions in the Pacific Northwest (PNW), United States. Specifically, we modeled the relationship between weekly visitation and mean weekly minimum and maximum temperature, precipitation, Air Quality Index (AQI), and particulate matter 2.5 concentration (PM2.5, often used as an indicator of wildfire smoke) during an extended peak visitation season from 2017 to 2021 in 91 PNW PPAs. We used mobile device data from StreetLight Data Inc. to estimate weekly vehicular visitation. Our findings indicate that increasing precipitation corresponded with decreased weekly visitation to all three types of PPAs and rising minimum temperatures corresponded with increased visitation. We found that rising maximum temperatures corresponded with increased visitation in federal and local PPAs, but corresponded with decreased visitation in local PPAs once temperatures reach a maximum threshold. We did not observe a maximum threshold effect in federal or state settings. Further, we found that the effect of air quality and smoke on visitation varies based on the metric used: increased PM2.5 concentrations (possibly indicating the presence of wildfire smoke) in federal and local PPAs corresponded with decreased visitation, while increased AQI in federal PPAs corresponded with increased visitation. These findings indicate that visitors may respond differently to different types of air pollution. Our results have implications for adapting peak- and shoulder- season visitor use management to current and future climate change within and beyond PPAs of the PNW.

    Time of travel of releases from Lake Wallenpaupack to the U.S. Geological Survey’s streamgage monitoring location on the Delaware River at Montague, New Jersey

    Released April 09, 2025 10:00 EST

    2025, Scientific Investigations Report 2025-5026

    Jaclynne Polcino, John J. Trainor, Jerilyn V. Collenburg

    In 2016, the U.S. Geological Survey (USGS) carried out a hydraulic study within the upper Delaware River Basin for the purpose of determining the time of travel for water releases from the Brookfield Renewable U.S. hydroelectric plant at Lake Wallenpaupack, Pennsylvania, to reach the USGS streamgage located on the Delaware River at Montague, New Jersey (site number 01438500). From September 19 to October 14, 2016, Brookfield Renewable initiated repeated releases of approximately 650 cubic feet per second (ft3/s) and 1,440 ft3/s. Hydraulic signals from the releases were tracked at nine key locations between Lake Wallenpaupack and the USGS streamgage at Montague, New Jersey (01438500). Gage height data were recorded at streamgages at major confluences of the Lackawaxen and Delaware Rivers, Mongaup and Delaware Rivers, and the Neversink and Delaware Rivers. The time of travel to the USGS streamgage at Montague, New Jersey, was determined to be 1,185 minutes during the approximately 650 ft3/s releases and 960 minutes during the approximately 1,440 ft3/s releases. Elevated streamflow between Lake Wallenpaupack and the Montague streamgage from runoff events prior to the dam releases was found to decrease calculated time of travel identified during the study. The results from this study can be used as a guide to estimate time of travel while considering the water level of downstream streamflow, the volume of water being released, and other outside influences, such as precipitation and snowmelt.

    Spatial and seasonal water-quality patterns and temporal water-quality trends in Lake Conroe on the West Fork San Jacinto River near Conroe, Texas, 1974–2021

    Released April 09, 2025 09:57 EST

    2025, Scientific Investigations Report 2025-5015

    Alexandra C. Adams

    The impoundment of Lake Conroe in 1973 created an important water resource for greater Houston, Texas. The U.S. Geological Survey, in cooperation with the San Jacinto River Authority, analyzed water-quality data collected from 1974 to 2021 at upreservoir, mid-reservoir, and downreservoir sites in Lake Conroe. Water-column and seasonal variability of selected water-quality constituents (physiochemical properties, major ions, nutrients, and trace metals) were assessed, as well as thermal stratification. Water-quality trends were evaluated for 1974–2021 and 1993–2021.

    Near-surface water (1–3 feet below the water surface) was warmer and contained higher dissolved-oxygen concentrations compared to near-bottom water (2–3 feet above the reservoir bottom). Dissolved-oxygen concentrations were lowest in summer and highest in winter. Specific conductance was higher near the bottom and varied seasonally, being lowest in winter and highest in summer. Values of pH were generally higher at the surface, with some variability between sites and seasons. Water transparency was higher downreservoir and seasonally lowest in summer.

    Major-ion concentrations varied minimally within the water column and seasonally, except for sulfate, which was higher in winter and lower in summer. Most nutrient and trace metal concentrations were highest near the bottom during summer, notably at deeper sites. Thermal stratification in Lake Conroe begins in spring and peaks in summer and was limited to the deeper parts of the reservoir. The seasonal variability observed in dissolved constituent concentrations was driven by thermal stratification. Trend analyses for 1974–2021 indicated positive trends in water temperature, dissolved oxygen, pH, potassium, sodium, and silica. Negative trends were detected for calcium and magnesium near the reservoir bottom. During 1993–2021, positive trends were detected for near-surface dissolved-oxygen concentration, specific conductance, pH, all major ions excluding sulfate, and near-surface ammonia plus organic nitrogen concentration. Negative trends were determined for ammonia, iron, and manganese concentrations. Water transparency generally decreased over time.

    Healing ogaa (walleye Sander vitreus) waters: Lessons and future directions for inland fisheries rehabilitation

    Released April 09, 2025 08:20 EST

    2025, Reviews in Fisheries Science and Aquaculture

    Holly Susan Embke, Zachary S. Feiner, Gretchen Hansen, Joseph T. Mrnak, Christopher I. Rounds, Greg G. Sass, Stephanie L. Shaw, Aaron D. Shultz

    ulturally, economically, and nutritionally valuable inland fisheries face many new challenges on top of chronic disturbances. In the upper midwestern United States, declines in cool- and coldwater fisheries have been observed, including ogaa/walleye Sander vitreus. In response to population declines, agencies have implemented rehabilitation efforts, and the frequency and intensity of efforts have increased recently given declines. Evaluating intervention outcomes is critical for institutional learning and to understand strategy effectiveness, but is difficult to do when multiple interventions are applied concurrently and in the absence of replication or controls. This review documents walleye rehabilitation efforts in the upper Midwest U.S., where a rehabilitation effort was defined as a coordinated effort with the stated intention to restore a self-sustaining population such that it required limited-to-no further intervention. We discuss: (1) strategies used; (2) similarities and differences in metrics of success; (3) factors leading to success; and (4) recommendations that may increase future successful rehabilitation. Strategies included harvest regulation changes, stocking, fish community manipulations, habitat enhancement, and partner discussions. Overall, evaluations of environmental, habitat, and fish community factors causing walleye population declines were not included in most rehabilitation plans before implementation. This review highlights an increased need for ecosystem-based fisheries management principles and cultivating ecological conditions that favor walleye as a potential path for future rehabilitation plans. Lessons drawn from rehabilitation plans are applicable to global inland fisheries to inform the conservation of declining fish populations.

    Variable phenology but consistent loss of ice cover of 1213 Minnesota lakes

    Released April 09, 2025 07:59 EST

    2025, Limnology and Oceanography Letters

    Jake R Walsh, Christopher I. Rounds, Kelsey Vitense, Holly K. Masui, Kenneth A. Blumenfeld, Peter J. Boulay, Shyam M. Thomas, Andrew Edgar Honsey, Naomi S. Blinick, Claire L. Rude, Jonah A. Bacon, Ashley A. LaRoque, Tarciso C.C. Leao, Gretchen J.A. Hansen

    Lake ice cover is declining globally with important implications for lake ecosystems. Ice loss studies often rely on small numbers of lakes with long-term data. We analyzed variation and trends in ice cover phenology from 1,213 lakes over 74 years (1949-2022) in Minnesota (USA), during which ice cover duration declined at a rate of 2 days per decade (14 days total) and became more variable. Despite variation in phenology, just 10-20% of lakes differed from statewide phenological trends. Accounting for synchronous annual variation and estimating trends over long time periods (e.g., >40 years) were critical for obtaining robust estimates of ice loss. The constant rates estimated here were consistent with recent global estimates (1.7-1.9 days per decade) and suggest that, even if present, accelerating rates of ice loss would be difficult to detect in the midst of shorter-term periods of warming and increasing variability.

    Integrating the bright and dark sides of aquatic resource subsidies – A synthesis

    Released April 08, 2025 16:21 EST

    2025, Ecology Letters (28)

    C. Twining, A. Blanco, C. Dutton, M. Kaintz, E.J. Harvey, Carmen Kowarik, Johanna M. Kraus, D. Martin-Creuzburg, T. Parmar, N.R. Razavi, N. Richoux, G. Saboret, C. Sarran, Travis S. Schmidt, J.R. Shipley, A.L. Subalusky

    Aquatic and terrestrial ecosystems are linked through the reciprocal exchange of materials and organisms. Aquatic-to-terrestrial subsidies are relatively small in most terrestrial ecosystems, but they can provide high contents of limiting resources that increase consumer fitness and ecosystem production. However, they also may carry significant contaminant loads, particularly in anthropogenically impacted watersheds. Global change processes, including land use change, climate change and biodiversity declines, are altering the quantity and quality of aquatic subsidies, potentially shifting the balance of costs and benefits of aquatic subsidies for terrestrial consumers. Many global change processes interact and impact both the bright and dark sides of aquatic subsidies simultaneously, highlighting the need for future integrative research that bridges ecosystem as well as disciplinary boundaries. We identify key research priorities, including increased quantification of the spatiotemporal variability in aquatic subsidies across a range of ecosystems, greater understanding of the landscape-scale extent of aquatic subsidy impacts and deeper exploration of the relative costs and benefits of aquatic subsidies for consumers.

    Potential effects of chronic wasting disease and supplemental feeding on elk populations in Wyoming

    Released April 08, 2025 15:00 EST

    2025, Fact Sheet 2024-3046

    Paul C. Cross, Todd G. Wojtowicz

    Introduction

    In 2023, the U.S. Geological Survey, in collaboration with the U.S. Department of Agriculture Forest Service and the U.S. Fish and Wildlife Service, evaluated the costs and benefits of supplemental elk (Cervus elaphus canadensis) feeding in western Wyoming. Elk supplemental feeding is intended to maintain elk populations in the winter and limit elk damage to private property. Supplemental feeding is also used to minimize the transmission of brucellosis (Brucella abortus) from elk to cattle. If brucellosis is detected in cattle, the U.S. Department of Agriculture requires that the entire herd be euthanized or placed in quarantine until the herd passes several negative tests for the disease. However, supplemental feeding may enhance the transmission and effects of chronic wasting disease (CWD), which has no treatment or vaccine, is always fatal, and can remain infectious in the environment for many years. Key findings from the U.S. Geological Survey evaluation help assess the costs and benefits of four supplemental elk feeding alternatives and their potential implications for the Greater Yellowstone Ecosystem.

    The 3D Elevation Program—Supporting Rhode Island’s economy

    Released April 08, 2025 14:25 EST

    2025, Fact Sheet 2025-3018

    Dan Walters

    Introduction  

    High-resolution elevation data are critical to applications of landscape modeling and planning, both of which have a significant effect on Rhode Island’s economy. In these and other enterprises, program managers, while aiming to strike a balance between accuracy and cost, strive to obtain the best available elevation data to help them address a range of issues. Programs focused on climate change, environmental management, transportation design and asset management, aviation navigation and safety, riverine ecosystem management, wildlife habitat characterization and management, shellfish aquaculture, and the management and mapping of forests, parks and recreation areas, soils, wetlands, and impervious surfaces are also among the critical applications that meet the State’s management needs and depend on light detection and ranging (lidar) data that provide a highly detailed three-dimensional (3D) model of the Earth’s surface and aboveground features.

    The 3D Elevation Program (3DEP) is managed by the U.S. Geological Survey (USGS) in partnership with Federal, State, Tribal, U.S. territorial, and local agencies to acquire consistent lidar coverage at quality level 2 or better to meet the many needs of the Nation and Rhode Island. The status of available and in-progress 3DEP baseline lidar data in Rhode Island is shown in figure 1. 3DEP baseline lidar data include quality level 2 or better, 1-meter or better digital elevation models, and lidar point clouds, and must meet the Lidar Base Specification version 1.2 (https://www.usgs.gov/3dep/lidarspec) or newer requirements. The National Enhanced Elevation Assessment identified user requirements and conservatively estimated that availability of lidar data would result in at least $178,560 in new benefits annually to the State. The top 10 Rhode Island business uses for 3D elevation data, which are based on the estimated annual conservative benefits of 3DEP, are shown in table 2.

    Historical coast snaps: Using centennial imagery to track shoreline change

    Released April 08, 2025 11:04 EST

    2025, Remote Sensing (p.)

    Fatima Valverde, Rui Taborda, Amy E. East, Cristina Ponte Lira

    Understanding long-term coastal evolution requires historical data, yet accessing reliable information becomes increasingly challenging for extended periods. While vertical aerial imagery has been extensively used in coastal studies since the mid-20th century, and satellite-derived shoreline measurements are now revolutionizing shoreline change studies, ground-based images, such as historical photographs and picture postcards, provide an alternative source of shoreline data for earlier periods when other datasets are scarce. Despite their frequent use for documenting qualitative morphological changes, these valuable historical data sources have rarely supported quantitative assessments of coastal evolution. This study demonstrates the potential of historical ground-oblique images for quantitatively assessing shoreline position and long-term change. Using Conceição-Duquesa Beach (Cascais, Portugal) as a case study, we analyze shoreline evolution over 92 years by applying a novel methodology to historical photographs and postcards. The approach combines image registration, shoreline detection, coordinate transformation, and rectification while accounting for positional uncertainty. Results reveal a significant counterclockwise rotation of the shoreline between the 20th and 21st centuries, exceeding estimated uncertainty thresholds. This study highlights the feasibility of using historical ground-based imagery to reconstruct shoreline positions and quantify long-term coastal change. The methodology is straightforward, adaptable, and offers a promising avenue for extending the temporal range of shoreline datasets, advancing our understanding of coastal evolution.

    Application of Hydrologic Simulation Program—FORTRAN (HSPF) as part of an integrated hydrologic model for the Salinas Valley, California

    Released April 08, 2025 10:50 EST

    2025, Scientific Investigations Report 2025-5009

    Joseph A. Hevesi, Wesley R. Henson, Randall T. Hanson, Elizabeth Rae Jachens, Sandra Bond, Marisa Melody Earll, Deidre Herbert

    The U.S. Geological Survey (USGS), in cooperation with the Monterey County Water Resources Agency, conducted studies to help evaluate the surface-water and groundwater resources of the Salinas Valley study area, consisting of the entire Salinas River watershed and several smaller, adjacent coastal watersheds draining into Monterey Bay. The Salinas Valley study area is a highly productive agricultural region that depends on the coordinated use of surface water and groundwater to meet demand for irrigation and public water supply. To continue to meet these demands, a better understanding of the historical water balance and the effects of water-resource development on the long-term sustainability of water resources in the Salinas Valley study area is needed.

    Influence of local river hydraulics on Kootenai River white sturgeon (Acipenser transmontanus) habitat selection during four spawning years, 2017–2020

    Released April 08, 2025 09:25 EST

    2025, Canadian Journal of Fisheries and Aquatic Sciences (82)

    Taylor Dudunake, Megan Kearney Kenworthy, Troy Smith, Sarah Stephenson, Ryan S. Hardy

    Understanding fine-scale habitat selection of endangered Kootenai River white sturgeon (Acipenser transmontanus) is an important component for monitoring and recovery efforts. Fine-scale habitat selection and quantifying temporal changes in suitable habitat contributes to the work of addressing recruitment failure within the Kootenai River population. Habitat suitability indices were developed using over 96 000 acoustic telemetry sturgeon detections and two-dimensional hydrodynamic model simulations near Bonners Ferry, Idaho, USA. The selected habitat was assessed to develop habitat suitability indices for sturgeon; females undergoing spawn migrations and non-spawners. The most frequented locations were 8–9 m deep and water velocities of 0.3–0.7 m·s−1. These observations suggest sturgeon with different spawning capabilities selected similar habitat. Weighted usable area was calculated to understand temporal variability in habitat quality, which showed a positive relationship with increases in flow. Results help understand the habitat limiting factors in regulated hydrologic regimes; provide biologists insight for monitoring efforts in discrete habitat conditions; guidance for water managers and the regulation of upstream water resources; and guidance to restoration practitioners for in-stream structure designs.

    How quickly do brook trout lose long-term thermal acclimation?

    Released April 08, 2025 08:37 EST

    2025, Journal of Thermal Biology (129)

    Matthew J. O'Donnell, Amy M. Regish, S.D. McCormick, Benjamin Letcher

    Abundances of coldwater adapted stream fish populations are declining largely due to anthropogenic influences, including increased temperature. To persist in streams with unsuitable thermal habitat, fish must move to coldwater patches, acclimate, or adapt to water temperatures above thermal optima. Brook trout, a coldwater adapted salmonid, has previously displayed physiological plasticity and the ability for reversible thermal acclimation when reared at higher temperatures. However, because stream temperatures are not static, it is important to explore the rate at which thermal acclimation occurs to evaluate whether prior thermal experience will influence future thermal performance. To determine the temporal scale in loss of thermal acclimation as water temperatures cool, we acclimated brook trout to three thermal regimes: +0 °C (ambient; mimicking the daily average water temperature of a nearby long-term study site), as well as +2 °C and +4 °C above ambient. After 2 years of being reared under those conditions, fish from the warmer treatments were moved to a common, colder temperature (ambient). We then used critical thermal maximum to measure the loss in acclimation response of fish from each treatment over time. We found that regardless of initial acclimation temperature, thermal tolerance of warm acclimated fish decreased rapidly for 1 week, then gradually decreased, and was completely lost within 42 days. This gradual loss of acclimation may be valuable to persistence in warmer streams and will be important to include in models of the impact climate change has on brook trout and other aquatic ectotherms with significant thermal plasticity.

    Re-prioritization of the U.S. Geological Survey Federal Priority Streamgage Network, 2022

    Released April 07, 2025 15:50 EST

    2023, Open-File Report 2023-1032

    Jonathan J.A. Dillow, Brian E. McCallum, Cory E. Angeroth

    The Federal Priority Streamgage (FPS) network of the U.S. Geological Survey (USGS), created in 1999 as the National Streamflow Information Program, receives Congressional appropriations to support the operation of a federally-funded “backbone” network of streamflow gages across the United States that are designated to meet the “Federal needs” or priorities of the country. Anticipating the evolution of Federal stakeholder water-data needs, the USGS launched a re-evaluation of the fundamental priorities for the FPS network in October 2020. In March 2022, the FPS Re-Prioritization Project used an online survey to solicit feedback from 767 stakeholders representing 22 Federal agencies who benefit from the FPS network. Additional feedback from survey respondents was obtained during online listening sessions to validate the USGS’s understanding of current Federal water-data needs. Results of the feedback show that the original five network priorities identified by the U.S. Geological Survey in 1999 are still valid but require modification to better incorporate additional needs, including Federal water operations, streamflow trends and extremes, water rights involving Federal lands, and streamflow data supporting ecosystem health. Federal stakeholder feedback also indicated that the inclusion of precipitation and water-temperature data collection, along with stream imagery, would enhance the value of the FPS network.

    Results of the FPS Re-Prioritization Project and Open Season that ended in May 2024 revealed that the number of FPS locations meeting the updated eligibility criteria nearly tripled, which illustrates the value of the information provided by the FPS network. The Water Forecasting & Operations and the Water Quality network priorities contributed to the largest number of new eligible FPS sites, demonstrating the importance of the FPS network in supporting informed decisions related to the protection of life, property, the environment, and the economy of the United States.

    Sediment nutrient dynamics in selected Milwaukee metropolitan area streams, Wisconsin, 2022

    Released April 07, 2025 14:02 EST

    2025, Scientific Investigations Report 2025-5012

    Rebecca M. Kreiling, Lynn A. Bartsch, Kenna J. Gierke, Patrik M. Perner, Faith A. Fitzpatrick, Hayley T. Olds

    The U.S. Geological Survey and Milwaukee Metropolitan Sewerage District in Wisconsin have an ongoing partnership to monitor water quality in streams in the Milwaukee metropolitan area and to assess the effects of stream restoration on habitat and water quality. Because sediment nutrient dynamics can improve or further impair water quality, we measured sediment nitrogen and phosphorus concentrations, potential nitrogen removal, and potential phosphorus retention at 32 streams sites in the Milwaukee metropolitan area in summer 2022. Four of the sites were in rehabilitated stream reaches. Based on the results from this project, we provided a rating of good, fair, or poor for the sediment nutrient dynamics at each site.

    Sediment nitrogen removal and phosphorus retention in stream reaches increased as the proportion of fine particles increased. Bioavailable nitrogen and phosphorus concentrations increased in stream reaches as particle size decreased, especially at locations with more silt and clay. Particle size typically decreased from upstream to downstream, and several of the sites with finer particles were in downstream parts of the study area, especially in the Milwaukee Estuary sites. The sites that had more fine sediment and higher bioavailable nutrients also had elevated rates of nitrification and denitrification enzyme activity, which is a measurement of the potential nitrogen removal when nitrogen and carbon do not limit the denitrifying bacteria. Additionally, sites with fine sediment typically had the highest potential to retain phosphorus as fine sediment provides many binding sites for phosphorus. The binding sites can become saturated with phosphorus, however, increasing the potential for the phosphorus to be released to stream water. Five of the 32 sampled sites were potentially saturated with phosphorus. Sites that contained more agricultural land in their drainage areas were at higher risk of having sediment that was saturated or near-saturation; however, the sites that had more agricultural land in their drainage areas also had higher nitrification rates. Results from this study indicate that stream rehabilitation projects that promote sediment deposition and accumulation of organic matter in the stream channel can increase nitrogen removal and phosphorus retention.

    A nationwide evaluation of crowd-sourced ambient temperature data

    Released April 07, 2025 09:33 EST

    2025, Frontiers of Environmental Science and Engineering in China (13)

    Priyanka deSouza, Peter Christian Ibsen, Daniel M. Westervelt, Ralph Kahn, Benjamin Zaitchik, Patrick Kinney

    Growing concerns about heat in urban areas paired with the sparsity of weather stations have resulted in individuals drawing on data from citizen science sensor networks to fill in data gaps. The PurpleAir are the most widely-used low-cost air quality sensors in the contiguous United States with 14,777 deployed between 1 Jan 2017 and 20 July 2021. Although the air quality data from PurpleAir sensors have been widely studied, less attention has been paid to reported temperature. We compare temperature metrics reported by PurpleAir sensors with a gridded temperature product, the North American Land Data Assimilation System (NLDAS)-2, which although not a gold-standard measure of temperature, is widely used in epidemiologic research. We evaluate the lag between indoor and outdoor PurpleAir temperatures. We report associations of the difference between outdoor PurpleAir temperatures and NLDAS-2 temperatures, an indicator of degradation, and the duration of sensor operation. Finally, based on the temperature range recorded by the outdoor PurpleAir sensors vis.a.vis NLDAS-2 temperatures, we provide a list of 271 (2.5%) sensors potentially misclassified as outdoor and likely located indoors. We observed that outdoor PurpleAir sensors agreed well with NLDAS-2 (R2 > 0.82). This association broke down under warm conditions (daily average NLDAS ≥ 21.1oC). Landcover and climate zone were significant modifiers of the association between PurpleAir and NLDAS-2 temperature metrics with the poorest PurpleAir- NLDAS-2 agreement in urban areas. Indoor PurpleAir temperatures lagged hourly NLDAS temperatures by two hours across almost all climate zones. The mean difference in hourly PurpleAir and NLDAS-2 temperatures increased by 0.57oC for every operational year, suggesting that careful attention must be paid to degradation. Overall, we find for use in epidemiological studies, that the PurpleAir sensor data is a reliable metric of daytime mean air temperature, but researchers should be aware of its limitations when examining extreme heat, or when aggregating sensor data across multiple years.

    A synthesis of freshwater forested wetland soil organic carbon storage

    Released April 07, 2025 09:27 EST

    2025, Frontiers in Forests and Global Change (8)

    Yadav Sapkota, Jacob F. Berkowitz, Camille Stagg, Ryan R. Busby

    Freshwater forested wetlands account for ~76% (918 M ha) of the total global wetland extent. However, freshwater forested wetlands are difficult to distinguish from upland forest due to canopy coverage, the abundance of wetland-nonwetland mosaics, seasonal hydropatterns, and fewer readily observable connections to large surface water bodies relative to marshes and other emergent habitats. Therefore, freshwater forested wetland ecosystems are often misclassified as upland forests in carbon accounting models, underestimating soil organic carbon (SOC) storage. This study highlights freshwater forested wetland SOC accounting challenges and presents SOC densities/stocks from a global literature synthesis across different freshwater forested wetland types. We reviewed 374 forested wetland articles, compiling and calculating carbon densities by depth from 90 freshwater forested wetland studies to construct a database of 334 study sites including nine countries. The median (± median absolute deviation) SOC stock was 91.2 ± 46.4 Mg C ha−1 and 235.3 ± 125.6 Mg C ha−1 in the top 30 cm and 100 cm of soil, respectively. The tidal freshwater forested wetland had highest SOC stock (341.6 ± 98.4 Mg C ha−1) in the upper 100 cm soil profile followed by rainforest (285.6 ± 75.8 Mg C ha−1), non-tidal swamps (229.3 ± 120.4 Mg C ha−1), and floodplain forested wetlands (176.6 ± 84 Mg C ha−1). Within the conterminous United States forest type groups, the Tsuga/Picea group had the highest median SOC stocks (353.6 ± 82.9 Mg ha−1) in the top 100 cm of soil followed by Quercus/Pinus (246.6 ± 82.3 Mg ha−1) and Quercus/Liquidambar/Taxodium (207.9 ± 87.7 Mg ha−1) groups, likely driven by variability in litter degradability, wetland hydroperiod, geomorphic positions, and regional climatic factors. This literature synthesis highlights SOC accounting in freshwater forested wetland carbon pools when estimating carbon stocks and fluxes. Results can be used to improve carbon modeling outcomes, as well as inform regional, national, and global management of wetland carbon resources.

    Equilibrium line altitudes, accumulation areas, and the vulnerability of glaciers in Alaska

    Released April 07, 2025 08:01 EST

    2025, Journal of Glaciology (71)

    Lucas Zeller, Daniel J McGrath, Louis C. Sass, Caitlyn Florentine, Jacob Downs

    The accumulation area ratio (AAR) of a glacier reflects its current state of equilibrium, or disequilibrium, with climate and its vulnerability to future climate change. Here, we present an inventory of glacier-specific annual accumulation areas and equilibrium line altitudes (ELAs) for over 3000 glaciers in Alaska and northwest Canada (88% of the regional glacier area) from 2018 to 2022 derived from Sentinel-2 imagery. We find that the 5 year average AAR of the entire study area is 0.41, with an inter-annual range of 0.25–0.49. More than 1000 glaciers, representing 8% of the investigated glacier area, were found to have effectively no accumulation area. Summer temperature and winter precipitation from ERA5-Land explained nearly 50% of the inter-annual ELA variability across the entire study region (R2 = 0.47). An analysis of future climate scenarios (SSP2-4.5) projects that ELAs will rise by ∼170 m on average by the end of the 21st century. Such changes would result in a loss of 25% of the modern accumulation area, leaving a total of 1900 glaciers (22% of the investigated area) with no accumulation area. These results highlight the current state of glacier disequilibrium with modern climate, as well as glacier vulnerability to projected future warming.

    Estimating indicators of cyanobacterial harmful algal blooms in New York State

    Released April 07, 2025 07:50 EST

    2025, Ecological Indicators (173)

    Philip Savoy, Rebecca Michelle Gorney, Jennifer L. Graham

    Cyanobacteria harmful algal blooms (cyanoHABs) are a global concern for aquatic ecosystem and human health. Limited funding for monitoring programs and inconsistent determination of cyanoHAB occurrence present challenges for identifying commonly effective variables for characterizing cyanoHABs and the development of generalized models. We compiled a combination of water quality measurements, lake morphology, climatology, remote sensing data, and observations of cyanoHAB occurrence across New York State and used this dataset to develop two sets of predictive models. The first model predicted chlorophyll a, a common indicator of algal biomass, and assessed the importance of variables for modeled predictions. The most important variables were then used in a second set of models to classify cyanoHAB occurrence. The irradiance attenuation coefficient (Kd), which was estimated from Secchi depth measurements, and total phosphorus were the two most important variables for predicting chlorophyll a. The second model examined several variables for their ability to classify cyanoHAB occurrence. Predicted cyanoHAB occurrence based on thresholds of chlorophyll aKd, or total nitrogen all had moderate agreement and were able to correctly classify approximately 70% of observed cyanoHABs. Our analysis indicated that multiple data types were important for predicting chlorophyll a statewide and that simple widely available water quality parameters could classify cyanoHABs occurrence with reasonable accuracy. Identifying variables that can be monitored with increased frequency and decreased latency to detect cyanoHAB occurrence will better inform water managers and provide valuable additional data for further refining predictive models of the likelihood of cyanoHABs occurrence.

    Fast or slow: An evaluation of Ti-in-quartz diffusion coefficients through comparisons of quartz and plagioclase diffusion times

    Released April 06, 2025 09:14 EST

    2025, Volcanica (8) 189-202

    Sophia Wang, Guilherme Gualda, Jordan Edward Lubbers, Adam Kent

    Diffusion geochronometry using Ti-in-quartz has become a valuable method in understanding the evolution of silicic magmas. However, four different options for Ti diffusivity (DTi) currently exist, spanning three orders of magnitude, resulting in substantially different estimated times and interpretations. We present Ti-in-quartz diffusion times for the Cerro Galán Ignimbrite using the Cherniak et al. [2007] (10.1016/j.chemgeo.2006.09.001), Audétat et al. [2021] (10.1130/g48785.1), Audétat et al. [2023] (10.1038/s41467-023-39912-5), and Jollands et al. [2020] (10.1130/g47238.1DTi value and (1) compare these against plagioclase diffusion times derived from the same samples, (2) consider evidence for Ti diffusion in quartz under relevant magmatic timescales, and (3) compute derived quartz growth rates for crystals from the Cerro Galán Ignimbrite. On all accounts, we find that the Cherniak et al. [2007] diffusion coefficient yields diffusion times that agree much better with independent evidence than those derived using slower DTi values [Jollands et al. 2020; Audétat et al. 2021; 2023].

    Neural network-based temporal ensembling of water depth estimates derived from SuperDove Images

    Released April 06, 2025 08:01 EST

    2025, Remote Sensing (17)

    Milad Niroumand-Jadidi, Carl J. Legleiter, Francesca Bovolo

    CubeSats provide a wealth of high-frequency observations at a meter-scale spatial resolution. However, most current methods of inferring water depth from satellite data consider only a single image. This approach is sensitive to the radiometric quality of the data acquired at that particular instant in time, which could be degraded by various confounding factors, such as sun glint or atmospheric effects. Moreover, using single images in isolation fails to exploit recent improvements in the frequency of satellite image acquisition. This study aims to leverage the dense image time series from the SuperDove constellation via an ensembling framework that helps to improve empirical (regression-based) bathymetry retrieval. Unlike previous studies that only ensembled the original spectral data, we introduce a neural network-based method that instead ensembles the water depths derived from multi-temporal imagery, provided the data are acquired under steady flow conditions. We refer to this new approach as NN-depth ensembling. First, every image is treated individually to derive multitemporal depth estimates. Then, we use another NN regressor to ensemble the temporal water depths. This step serves to automatically weight the contribution of the bathymetric estimates from each time instance to the final bathymetry product. Unlike methods that ensemble spectral data, NN-depth ensembling mitigates against propagation of uncertainties in spectral data (e.g., noise due to sun glint) to the final bathymetric product. The proposed NN-depth ensembling is applied to temporal SuperDove imagery of reaches from the American, Potomac, and Colorado rivers with depths of up to 10 m and evaluated against in situ measurements. The proposed method provided more accurate and robust bathymetry retrieval than single-image analyses and other ensembling approaches.

    The North American greenhouse gas budget: Emissions, removals, and integration for CO2, CH4, and N2O (2010–2019): Results From the Second REgional Carbon Cycle Assessment and Processes Study (RECCAP2)

    Released April 05, 2025 09:46 EST

    2025, Global Biogeochemical Cycles (39)

    Benjamin Poulter, Guillermo Murray-Tortarolo, Daniel J. Hayes, Philippe Ciais, Robbie M. Andrew, Ana Bastos, Brendan Byrne, David Butman, Josep G. Canadell, Abhishek Chatterjee, Grant Domke, Andrew F. Feldman, Kelsey Foster, Neha Hunka, Robert B. Jackson, Werner A. Kurz, Ayia Lindquist, Maodian Liu, Ingrid Luijkx, Arnaud Mialon, Anna M. Michalak, John Miller, Wolfgang A. Obermeier, Naiqin Pan, James T. Randerson, Peter A. Raymond, Pierre Regnier, Laure Resplandy, Gerard Rocher-Ros, Nemesio Rodriquez-Fernandez, Judith A. Rosentreter, Julio Cesar Salazar-Neira, Suzanne E. Tank, Hanqin Tan, Rodrigo Vargas, Yohanna Villalobos, Jonathan A. Wang, Xinyuan Wei, Kimberly Wickland, Christopher J. Williams , Lisamarie Windham-Myers, Christopher W. Woodall, Qing Ying, Zhen Zhang

    Accurate accounting of greenhouse-gas (GHG) emissions and removals is central to tracking progress toward climate mitigation and for monitoring potential climate-change feedbacks. GHG budgeting and reporting can follow either the Intergovernmental Panel on Climate Change methodologies for National Greenhouse Gas Inventory (NGHGI) reporting or use atmospheric-based “top-down” (TD) inversions or process-based “bottom-up” (BU) approaches. To help understand and reconcile these approaches, the Second REgional Carbon Cycle Assessment and Processes study (RECCAP2) was established to quantify GHG emissions and removals for carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O), for ten-land and five-ocean regions for 2010–2019. Here, we present the results for the North American land region (Canada, the United States, Mexico, Central America and the Caribbean). For 2010–2019, the NGHGI reported total net-GHG emissions of 7,270 TgCO2-eq yr−1 compared to TD estimates of 6,132 ± 1,846 TgCO2-eq yr−1 and BU estimates of 9,060 ± 898 TgCO2-eq yr−1. Reconciling differences between the NGHGI, TD and BU approaches depended on (a) accounting for lateral fluxes of CO2 along the land-ocean-aquatic continuum (LOAC) and trade, (b) correcting land-use CO2 emissions for the loss-of-additional-sink capacity (LASC), (c) avoiding double counting of inland water CH4 emissions, and (d) adjusting area estimates to match the NGHGI definition of the managed-land proxy. Uncertainties remain from inland-water CO2 evasion, the conversion of nitrogen fertilizers to N2O, and from less-frequent NGHGI reporting from non-Annex-1 countries. The RECCAP2 framework plays a key role in reconciling independent GHG-reporting methodologies to support policy commitments while providing insights into biogeochemical processes and responses to climate change.

    Salinas Valley integrated hydrologic and reservoir operations models, Monterey and San Luis Obispo Counties, California

    Released April 05, 2025 09:01 EST

    2025, Preprint

    Wesley R. Henson, Randy Hanson, Scott E. Boyce, Joseph A. Hevesi, Elizabeth Rae Jachens

    The area surrounding the Salinas Valley groundwater basin in Monterey and San Luis Obispo Counties of California is a highly productive agricultural area, contributes significantly to the local economy, and provides a substantial portion of vegetables and other agricultural commodities to the Nation. This region of California provides about half of the Nation’s lettuce, celery, broccoli, and spinach each year. Thus, this agricultural area provides significant volumes of agricultural products not just for California but the entire United States. Changes in population and increased agricultural development, which includes a shift toward more water-intensive crops, and climate variability, have put increasing demand on both surface water and groundwater resources in the valley. This has resulted in water management challenges in the Salinas Valley that are predominantly related to distribution of water supply throughout the basin. Where and when the water is present in the surface and subsurface does not coincide with where and when the water is needed. To deal with the distribution issue, historically water has been used conjunctively in the valley. Conjunctive use is a water management strategy that coordinates surface water and groundwater use to maximize water availability. Groundwater is used throughout the Salinas Valley to meet water demands when surface water supplies are insufficient. Availability of surface water is constrained by climate. Precipitation and streamflow vary seasonally and year to year. Although there are two reservoirs in the Salinas Valley to capture and store water during wet periods, the only conveyance of reservoir water to coastal agricultural areas is the Salinas River. Increasing demand on groundwater and surface water resources throughout the Salinas Valley has resulted in undesirable effects of unsustainable water use, such as surface water depletion, groundwater level declines, storage depletion in the principal aquifers, and seawater intrusion. To address these escalating issues, local communities, water management agencies, and groundwater sustainability agencies are evaluating how to sustainably manage both their surface water and groundwater resources. To meet water demands and reduce undesirable effects of unsustainable water use, continued conjunctive management of surface water and groundwater would ideally incorporate strategies to deal with increases in demand and a variable climate. To evaluate the challenging water management issues in the Salinas Valley, the U.S. Geological Survey, Monterey County Water Resource Agency, and the Salinas Valley Basin Groundwater Sustainability Agency developed a comprehensive suite of models that represent the Salinas Valley Hydrogeologic system called the Salinas Valley System Model. The Salinas Valley Geologic Framework was developed to characterize the subsurface using various topographic and geologic data sources, including information on hydrogeologic units, their surfaces and extents, geologic structures, lithology, and elevations from borehole data and cross sections, as well as details on faults and existing models. The Salinas Valley Watershed Model simulates the entire Salinas River watershed. Monthly surface water inflows into the integrated hydrologic model domain were simulated using the Salinas Valley Watershed Model. The historical model uses historical climate data, water and land use data, and reservoir releases to simulate agricultural operations, including landscape water demands, diversions, and reclaimed wastewater. The operational model adds an embedded reservoir operations framework to the simulation of the historical model that allows specified operational rules to simulate reservoir releases and changes in reservoir storage. The operational model assumes current reservoir operations and constant land use, which differs from historical conditions. Thus, the operational model is a hypothetical baseline model that can be used by local water managers to evaluate and quantify potential benefits of water supply projects. Together, the geologic framework, watershed, historical, and operational models form a tool that can be used to simulate irrigated agriculture and associated reservoir operations of the integrated hydrologic system of the Salinas Valley.

    Linking tidal-creek sediment fluxes to vertical sediment accretion in a restored salt marsh

    Released April 05, 2025 08:46 EST

    2025, Earth Surface Processes and Landforms (50)

    Daniel J. Nowacki, Jessica R. Lacy, SeanPaul La Selle

    Despite growing interest and investment in salt-marsh restoration, relatively few marshes subjected to restoration efforts have been systematically monitored to assess physical restoration trajectory or success. In south San Francisco Bay, CA, USA, where 83% of wetlands were lost via human manipulation, the largest wetland restoration effort on the U.S. west coast is currently underway, restoring approximately 6,000 ha of former salt-production ponds to mixed habitats. The Whale’s Tail–Cargill Mitigation salt-marsh complex in south San Francisco Bay has a century-long history of drainage, industrial use as salt-production ponds, and subsequent restoration and recovery. Restoration of the 20-ha Cargill Mitigation Marsh was initiated in the late 1990s when the levee surrounding the subsided, former salt-production pond was breached in two locations, enabling conversion back to salt-marsh habitat in the subsequent decades. Here we present time-series measurements of sediment fluxes in the primary tidal creek entering the salt-marsh complex, which are compared to decadal-scale sedimentation patterns determined from repeat elevation surveys and cores collected at the study site. All three methods show net sediment import to the restored marsh. The greatest equivalent sedimentation rates occurred early in the restoration, with generally decreasing rates through time. The long-term average, as determined from cores and expressed as a vertical sedimentation rate, is approximately 1.8 cm yr -1. Rates from the elevation data are between 1.4 and 2.6 cm yr-1, with higher rates earlier in the restoration. The most recent estimates, computed from time-series instrument deployments, indicate seasonal variability in sediment import. Annualized rates are lower in winter, approximately 0.1 cm yr-1, and higher in summer, approximately 1.7 cm yr-1. Although our measured long-term equivalent sedimentation rates are considerably greater than the current local relative sea-level rise (SLR) of 0.3 cm yr-1, an increase in SLR or decrease in available suspended sediment would threaten the ability of the marsh to keep pace with SLR and avoid drowning in the future.

    Identical sequence types of Yersinia ruckeri associated with lethal disease in wild-caught invasive Blue Catfish and cultured hybrid catfish (Channel Catfish ♀ × Blue Catfish ♂) from disparate aquatic ecosystems

    Released April 04, 2025 11:59 EST

    2025, Journal of Aquatic Animal Health

    Christine L. Densmore, Madeleine Hendrix, Stephen Reichley, Clayton D Raines, Noah Bressman, Zachary Crum, Lester Khoo, Geoffrey Waldbieser, Matt Griffin, Timothy J Welch, Luke R. Iwanowicz

    Objective

    The Blue Catfish Ictalurus furcatus is commonly raised in warmwater aquaculture in the United States to produce Channel Catfish I. punctatus × Blue Catfish hybrids. It is also a prominent aquatic invasive species of concern in the mid-Atlantic region of the United States. Here, Yersina ruckeri was isolated from moribund Blue Catfish and hybrid catfish from disparate regions of the USA. The goal of the research here was to compare these Y. ruckeri strains to each other and other known strains for which adequate sequence data was available. In addition, we sought to determine if the strain from Blue Catfish was pathogenic to Rainbow Trout Oncorhynchus mykiss.

    Methods

    Moribund hybrid catfish from culture ponds in Mississippi were processed for diagnostic evaluation in March 2016. In April 2022, a moribund Blue Catfish specimen was collected from a tributary of the Nanticoke River in Maryland. Bacterial isolates were identified and characterized using biochemical tests, antimicrobial sensitivity screening, serotyping, and complete or partial genome sequencing. Disease pathology was described via histology. The isolate from Blue Catfish was used in challenge experiments to determine if it was pathogenic to Rainbow Trout. Multilocus sequencing typing was conducted using the PubMLST database.

    Results

    Biochemical testing was consistent with Y. ruckeri. A draft genome of the Y. ruckeri isolate was assembled based on Oxford Nanopore Technology sequencing and identified a single genomic replicon (3,791,418 bp) consistent in size to other Y. ruckeri genomes and a pLT plasmid (60, 933 bp). The challenge study demonstrated no significant virulence of this isolate for Rainbow Trout (Y. ruckeri). This isolate was most similar to other strains isolated from ictalurids. Notably, the gyrase B gene from this isolate was identical to that of archived strains isolated from moribund Mississippi hybrid catfish aquaculture during 2016 and these isolates share identical PubMLST sequence type profiles. Similarly, they shared a pLT plasmid that differed by only 6 bp. This plasmid has never been reported from trout isolates and appears to be unique to ictalurids.

    Conclusions

    Analyses here provide preliminary genetic evidence that geographically distant (Maryland and Mississippi, USA) isolates of Y. ruckeri from ictalurids are genetically similar to each other and Y. ruckeri (strain SC09) that infects ictalurids in China. This strain is not a biothreat to Rainbow Trout at typical culture temperatures.

    Nanometer-scale relationships between sedimentary organic matter molecular composition, fluorescence, cathodoluminescence, and reflectance: The importance of oxygen content at low thermal maturities

    Released April 04, 2025 10:19 EST

    2025, Organic Geochemistry (204)

    Aaron M. Jubb, Paul C. Hackley, Ryan J. McAleer, Jing Qu

    Molecular characterization of sedimentary organic matter (SOM), termed macerals, is a common goal when seeking to understand petroleum generation as well as other geologic processes in deep time. However, unambiguous measurement of discrete macerals is challenging due to the small size of organic particles in sedimentary rocks, the proximity of different organic matter types to one another, mineral-organic matter interactions, and maceral mixing that occurs during SOM isolation prior to ex situ analysis. The recent advent of infrared spectrometers capable of nanometer-scale resolution and the application of these technologies to geologic samples has enabled advances in rapid, in situ molecular characterization of SOM allowing for insights into paleoenvironmental processes, such as organic matter productivity and preservation, among others. Here we employ one such technology, optical photothermal infrared (OPTIR) spectroscopy, to map SOM functional group distributions at 500-nm resolution in a sample from the Lower Cretaceous Sunniland Limestone of the South Florida Basin. Examined fields of view include occurrences of amorphous organic matter (AOM), inertinite, micrinite, solid bitumen, telalginite, and vitrinite. OPTIR data from these macerals are compared against traditional organic petrographic data from the same organic grains including fluorescence intensity and white light reflectance as well as against cathodoluminescence response, an emerging organic petrographic approach. Maceral oxygen content (using carbonyl functional group abundance as a proxy) is observed to vary widely between maceral types but correlates strongly with fluorescence and cathodoluminescence intensity as well as against reflectance. These findings highlight the important role that oxygen content plays in determining the optical properties of SOM and further demonstrate the ability of OPTIR to discriminate subtle molecular differences between SOM types.

    Pediment formation and subsequent erosion in Gale crater: Clues to the climate history of Mars

    Released April 04, 2025 07:53 EST

    2025, Icarus (430)

    A.B. Bryk, W.E. Dietrich, Kristen A. Bennett, V.K. Fox, C.M. Fedo, M.P. Lamb, E.S. Kite, L.M. Thompson, S.G. Banham, J. Schieber, J.A. Grant, A.R. Vasavada, A.A. Fraeman, Lauren A. Edgar, P. J. Gasda, R.C. Wiens, J.P. Grotzinger, K. Stack-Morgan, R.E. Arvidson, O. Gasnault, S. Le Mouelic, S. Gupta, R.M.E. Williams, R.Y. Sheppard, K.W. Lewis, D.M. Rubin, W. Rapin, M.N. Hughes, M. Turner, S.A. Wilson, J.M. Davis, R.E. Kronyak, L. Le Deit, L.C. Kah, J. Frydenvang, R.J. Sullivan, C.C. Bedford, E. Dehouck, H.E. Newsom, M.C. Malin

    Evidence of paleo-rivers, fans, deltas, lakes, and channel networks across Mars has prompted much debate about what climate conditions would permit the formation of these surface water derived features. Pediments, gently sloping erosional surfaces of low relief developed in bedrock, have also been identified on Mars. On Earth, these erosional landforms, often thought to be created by overland flow and shallow channelized runoff, are typically capped by fluvial sediments, and thus in exceptionally arid regions, pediments are interpreted to record past wet periods. Here we document the Greenheugh pediment in Gale crater, exploiting the observational capability of the Curiosity rover. The absence of a fluvial cap suggests that the pediment was likely cut by wind erosion, not fluvial processes. The pediment was then buried by an aeolian deposit (Stimson sandstone) that mantled the lower footslopes of Aeolis Mons (informally known as Mt. Sharp). This burial terminated active wind erosion, preserving the pediment surface (as an angular unconformity). Groundwater was present prior-to, during, and shortly after Stimson deposition, perhaps contributing to lithification and certainly to early diagenesis. Post lithification, wind erosion first cut canyons in the northern most footslopes (north of Vera Rubin ridge). Unlithified gravels were deposited in these canyons, likely due to runoff from Mt. Sharp. Boulder-rich fluvial and debris flow deposits built a > 70 m thick sequence (Gediz Vallis ridge) on the southern Greenheugh pediment. Continued wind erosion left elevated patches of gravel on the northern footslopes, and exposure age dating shows that erosion essentially ceased before 1 Ga (but possibly much earlier). Erosion to the south led to emergence of Vera Rubin ridge, retreat of the Greenheugh pediment, and the formation of Glen Torridon valley. Hence, this footslope environment of Mt. Sharp records climate-driven periods of wind erosion, aeolian deposition (and groundwater activity), surface runoff and sediment deposition, followed by further significant wind erosion that declined to present very slow rates. This likely occurred during the late Hesperian and possibly into the Amazonian.

    Multiyear crop residue cover mapping using narrow-band vs. broad-band shortwave infrared satellite imagery

    Released April 03, 2025 11:10 EST

    2025, Soil and Tillage Research (251)

    Brian T Lamb, W. Dean Hively, Jyoti Jennewein, Alison Thieme, Alexander M. Soroka, Leticia Santos, Daniela Jones, Steven Mirsky

    Crop residue serves an important role in agricultural systems as high levels of fractional crop residue cover (fR) can reduce erosion, preserve soil moisture, and build soil organic carbon. However, the ability to accurately quantify fR at scale has been limited. In this study we produced annual maps of fR for farmland in Maryland, USA using WorldView-3 (WV3) imagery paired with on-farm photographs (n = 895) classified to fR using SamplePoint software. Univariate linear regressions were used to compare photograph fR to WV3 crop residue indices including: 1) Shortwave Infrared Normalized Difference Residue Index (SINDRI), 2) Shortwave Infrared Difference Residue Index (SIDRI), 3) Normalized Difference Tillage Index (NDTI), and 4) Shortwave Infrared Angle Index (SWIRA). SINDRI and SIDRI are based on narrow bands capable of measuring lignocellulose absorption features. NDTI and SWIRA are based on Landsat-comparable broad bands. Our findings demonstrated that SINDRI outperformed other indices in fR estimation in terms of coefficient of determination (R2 = 0.869) and root mean square error (RMSE = 0.111), when R2 and RMSE were averaged across six individual years. For a univariate analysis combining five years of high-quality WV3 imagery, SINDRI again exhibited the highest fR estimation performance (R2 = 0.795; RMSE = 0.141), suggesting that SINDRI can map fR accurately with a singular relationship, potentially reducing the need for labor-intensive ground data collection. For broad-band indices, a multiple linear regression analysis that included a Water Index (WI) and Normalized Difference Vegetation Index (NDVI) as additional predictors increased the accuracy of fR estimation significantly, particularly for SWIRA (R2 = 0.767; RMSE = 0.144), but also NDTI (R2 = 0.654; RMSE = 0.174). Our findings suggest that while indices computed from narrow-band imagery are most accurate for fR estimation, SWIRA has the potential to improve fR estimation compared to NDTI, especially when used in conjunction with WI and NDVI. An index suite of SWIRA, WI, and NDVI can be computed with Landsat 4–9 imagery, providing a more accurate record of global fR dating back to 1982.

    Assessing the effect of coral reef restoration location on coastal flood hazard along the San Juan Coastline, Puerto Rico

    Released April 03, 2025 09:53 EST

    2025, Frontiers in Marine Science (12)

    Ramin Familkhalili, Curt Storlazzi, Michael Nemeth, Shay Viehman

    Coastal resilience has become a pressing global issue due to the growing vulnerability of coastlines to the effects of climate change. Nature-based solutions have emerged as a promising approach to coastal protection to not only enhance coastal resilience, but also restore critical ecosystems. Coral reef restoration has the potential to provide ecosystem services benefits; however, there are still key uncertainties in linking restoration design to reductions in coastal flood hazard under current and future climate conditions. In this study, we applied one-dimensional and two-dimensional numerical coastal engineering models, calibrated and validated using field data, to evaluate the effectiveness of coral restoration scenarios on coastal waves, water levels, and flooding along the coast of San Juan, Puerto Rico, U.S.A. Model results indicate a small reduction in maximum water levels under the proposed restoration scenarios. This underscores the importance of these endeavors, not only for ecological preservation but also for preventing further reef deterioration. Such preservation is essential for mitigating the increased coastal risks anticipated in the future. Results from this study provide information to guide policymakers and coastal managers in making informed decisions on viable restoration project design options. By systematically evaluating how restoration location impacts coastal flood hazards, communities can develop and implement proactive strategies to mitigate flood-related risk. In addition, by restoring coral reefs, communities can contribute to environmental preservation while ensuring sustainable development and protection of coastal environments.

    Temporal and spatial comparison of coal mine ventilation methane emissions and mitigation quantified using PRISMA satellite data and on-site measurements

    Released April 03, 2025 09:24 EST

    2025, Science of the Total Environment (975)

    C. Özgen Karacan, Itziar Irakulis-Loitxate, Robert A. Field, Peter D. Warwick

    Emission monitoring at the facility level (bottom-up, BU) is key for accurate reporting of coal mine methane (CMM) emissions. Recent advances in aerial and satellite observations (top-down, TD) indicate that these methods have the potential to support CMM emissions monitoring and reporting of, as well as track the effectiveness of, mitigation actions. That said, studies have shown discrepancies between BU and TD estimations. Performing TD monitoring with concurrent BU measurements at the same mines may help address the observed discrepancies and improve quantification methods to narrow the gap between BU and TD data. This paper presents a comparison of concurrent BU-TD methane emission fluxes monitored from two ventilation shafts at a southwestern Virginia, USA, longwall mine to complement the existing body of studies on satellite-based monitoring of coal mines by incorporating continuous ground-based monitoring with concurrent TD monitoring of methane emission fluxes to address the gap and provide valuable insights into temporal emission patterns. The shafts were monitored on multiple dates between 2020 and 2023. BU monitoring was performed at the exhaust fans, while TD quantifications used PRISMA hyperspectral satellite data and two different wind reanalysis datasets (i.e., GEOS-FP and ERA5). This mine also offered a unique opportunity for BU-TD comparisons before and after ventilation air methane (VAM) oxidizer operation, which was installed at one of the shafts in 2022. The results showed that TD-estimated mean fluxes were generally lower than BU data, which were attributed to quantification difficulties associated with the low albedo caused by heavy vegetation and the terrain of the area. However, despite the discrepancies in mean emissions, both the interquartile range and the data range of the distributions generally overlapped, and the estimates correctly showed the emission trends.

    Identifying recruitment sources across trophic levels in a large river food web

    Released April 03, 2025 09:02 EST

    2025, Ecology and Evolution (15)

    Shaley A. Valentine, Kristen L. Bouska, Gregory W. Whitledge

    Assemblages are connected through the movement of physical and biological resources including recruits. Identifying recruitment sources for predators and their prey could help us understand how assemblages use connectivity across multiple trophic levels and whether predator and prey recruitment is coupled. Recruitment sources of organisms across multiple trophic levels can be quantified by trace element analysis of stomach contents. We used trace element analysis of otoliths to determine recruitment contributions from tributaries of predatory largemouth bass (Micropterus salmoides) and bowfin (Amia calva) and their consumed prey collected from Pools 4, 8, and 13 of the Upper Mississippi River. We used laser ablation inductively coupled mass spectrometry to quantify strontium:calcium of the core of each otolith and classified each fish to a natal origin (i.e., tributary or potential resident). We compared patterns of natal origin across study reaches, collection years, and species and with previously published origins of independently sampled prey fish. Predator and prey assemblages across all study reaches recruited from tributaries. More prey (44%) than predators (17%) recruited from tributaries. Of fishes originating from tributaries, individuals recruited from various rivers including the large Minnesota and Wisconsin Rivers and several small tributaries. Patterns in natal origin were similar among predators and prey families and among reaches, across sampling years, and between consumed prey and independently sampled prey. Tributaries consistently contributed recruits to both prey and predator fishes, leading to a coupling of predator and prey recruitment sources across space and time. Predators directly and indirectly used tributaries for recruitment and persistence through their own and their prey's recruitment. We further highlighted the utility of using consumed prey to simultaneously study the ecology of prey and predator assemblages, thereby reducing research sampling needs.

    Pathways for potential exposure to onshore oil and gas wastewater: What we need to know to protect human health

    Released April 03, 2025 07:49 EST

    2025, Environmental Health Perspectives (9)

    Ayusha Ariana, Isabelle M. Cozzarelli, Cloelle Danforth, Bonnie McDevitt, Anna Rosofsky, Donna Vorhees

    Produced water is a chemically complex waste stream generated during oil and gas development. Roughly four trillion liters were generated onshore in the United States in 2021 (ALL Consulting, 2022, https://www.gwpc.org/wp-content/uploads/2021/09/2021_Produced_Water_Volumes.pdf). Efforts are underway to expand historic uses of produced water to offset freshwater needs in water-stressed regions, avoid induced seismic activity associated with its disposal, and extract commodities. Understanding the potential exposures from current and proposed produced water uses and management practices can help to inform health-protective practices. This review summarizes what is known about potential human exposure to produced water from onshore oil and gas development in the United States. We synthesize 236 publications to create a conceptual model of potential human exposure that illustrates the current state of scientific inquiry and knowledge. Exposure to produced water can occur following its release to the environment through spills or leaks during its handling and management. Exposure can also arise from authorized releases, including permitted discharges to surface water, crop irrigation, and road treatment. Knowledge gaps include understanding the variable composition and toxicity of produced water released to the environment, the performance of treatment methods, migration pathways through the environment that can result in human exposure, and the significance of the exposures for human and ecosystem health. Reducing these uncertainties may help in realizing the benefits of produced water use while simultaneously protecting human health.

    Scent detection dogs detect a species of hard tick, Dermacentor albipictus, with comparable accuracy and efficiency to traditional tick drag surveys

    Released April 02, 2025 15:51 EST

    2025, Parasites and Vectors (18)

    Troy Koser, Aimee Hurt, Laura Thompson, Alyson Courtemanch, Benjamin Wise, Paul C. Cross

    Background

    Accurate surveillance data are critical for addressing tick and tick-borne pathogen risk to human and animal health. Current surveillance methods for detecting invading or expanding tick species are limited in their ability to scale efficiently to state or national levels. In this study we explored the potential use of scent detection dogs to assist field surveys for a hard tick species: Dermacentor albipictus.

    Methods

    We used a series of indoor and in situ training simulations to teach scent detection dogs to recognize D. albipictus scent, distinguish tick scent from associated vegetation, and develop a cautious search pattern. After training, we deployed both a scent detection dog survey team and a human-only survey team on transect and surveillance plot surveys then compared the detection rates and efficiency of both methods.

    Results

    Scent detection dogs required more time and money to train on field surveys but were comparable to traditional tick drags when accounting for cost per unit area surveyed. There was a lack of agreement on positive (ticks present) versus negative (ticks not present) sites between the two methods, implying that neither method is particularly reliable at detecting D. albipictus.

    Conclusions

    Estimating detection bias and false negative rates for tick surveillance methods such as tick drags will be important for accurately evaluating tick-borne disease risk across space and into the future. We found scent detection dogs to be a reasonable alternative sampling approach to consider when ticks are at low abundance or patchily distributed such as during tick range expansion or novel invasions. Scent detection dogs may also be useful for sampling for ticks in areas or along surfaces that are difficult to sample with the traditional tick drag technique like at ports of entry or livestock competitions.

    High-precision U-Pb data and reference age for Emerald Lake apatite

    Released April 02, 2025 09:25 EST

    2025, Data in Brief (60)

    Francisco Apen, Sean Patrick Gaynor, Blair Schoene

    New isotope dilution thermal ionization mass spectrometry U-Pb data for Emerald Lake apatite demonstrate its potential as a reference material for geochronology. A three-dimensional 238U/206Pb-207Pb/206Pb-204Pb/206Pb isochron produces a 95.2 ± 1.1 Ma date with an initial Pb isotopic composition of 206Pb/204Pb = 18.85 ± 0.19 and 207Pb/204Pb = 15.68 ± 0.10 (n = 5, MSWD = 9.5). These data yield a weighted mean initial Pb-corrected 206Pb/238U date of 95.18 ± 0.10 Ma (n = 5, MSWD = 1.5) and a weighted mean initial Pb-corrected 207Pb/235U date of 95.20 ± 0.17 Ma (n = 5, MSWD = 0.5). The new high-precision U-Pb age of Emerald Lake apatite further enables its utility as a reference material for in situ U-Pb apatite geochronology. Aliquots of Emerald Lake apatite are available for distribution for use in future studies.

    U.S. Geological Survey global seabed mineral resources

    Released April 01, 2025 12:30 EST

    2025, Fact Sheet 2025-3017

    U.S. Geological Survey

    The U.S. Geological Survey (USGS) provides science and data on seabed mineral resources and ecosystems, as well as on the potential hazards associated with extraction. The Nation relies on minerals for infrastructure, technology, manufacturing, and energy production. Critical minerals are essential to the economic and national security of the United States and have a supply chain vulnerable to disruption.

    For decades, USGS scientific innovation has contributed to the delineation of seabed mineral resources, the mechanisms of seabed mineral formation, and the environmental impacts of resource extraction. Since 1962, the USGS has also led scientific inquiries into the potential for deep sea mining. By providing impartial science on seabed minerals and their environmental setting in the deep oceans, the USGS enables decision-makers to evaluate the best practices for mineral resource development.

    Spatiotemporal patterns in urban nutrient and suspended sediment loads and stream response to watershed management implementation

    Released April 01, 2025 09:53 EST

    2025, Environmental Monitoring and Assessment (197)

    Aaron J. Porter

    In recent years, local governments have invested heavily in management practices to reduce nutrient and sediment loads. These practices provide localities with nutrient and sediment regulatory reduction credits; however, their effects on water quality are poorly understood at the watershed scale. Long-term watershed-scale monitoring is essential for assessing progress toward water-quality goals, yet it has historically been lacking in urban watersheds. Since 2007, Fairfax County, Virginia, has partnered with the US Geological Survey to monitor and evaluate water-quality conditions in 20 small urban streams. This study assessed nutrient and suspended sediment loads, trends in concentration, and trends in load. Trends in load are affected by streamflow-induced variability that must be removed through a process called “flow-normalization;” however, existing methods have neither been applied to small urban watersheds nor to loads computed on a sub-daily timestep. In this study, four such methods also were assessed, and an adaptation of the weighted regressions on time, discharge, and season approach was found to be most effective. Loads, concentrations, and trends in load were spatially and temporally variable. Differences were attributed to physical watershed features such as geology, soils, and channel geomorphology, as well as urban sources such as turfgrass fertilization and septic infrastructure. Most notably, flow-normalized suspended sediment, nitrogen, and phosphorus loads decreased in two watersheds with completed stream restorations and increased in those with few implemented practices.

    Management strategy evaluation to assess trade-offs associated with invasive Blue Catfish fisheries and predation impacts

    Released April 01, 2025 09:41 EST

    2025, Marine and Coastal Fisheries: Dynamics, Management and Ecosystem Science (17)

    Corbin David Hilling, Yan Jiao, Joseph Schmitt, Mary C. Fabrizio, Paul L. Angermeier, Donald J. Orth

    Objective

    Many species are intentionally introduced beyond their native range to provide benefits to humans (e.g., food, recreation, or biocontrol). However, introduced species can become invasive and can harm native species, prompting resource managers to explore options to simultaneously conserve native biota and enhance fishing opportunities. Management of Chesapeake Bay Blue Catfish Ictalurus furcatus is complicated because the species supports a renowned trophy fishery and commercial and recreational harvest but also negatively affects native species. Consequently, there is uncertainty and disagreement on how to balance trade-offs associated with varying stakeholder interests.

    Methods

    We used a management strategy evaluation to project Blue Catfish population dynamics into the future under different fishery policies to understand whether fishery yield, trophy fishing opportunities, and predation on the economically and ecologically important blue crab Callinectes sapidus could be optimized in the James River, a Chesapeake Bay subestuary.

    Results

    Simulated population trajectories indicated that objectives related to maintaining fisheries and conserving prey populations were in conflict. Policies that increased the yield and abundance of trophy-size Blue Catfish (≥100 cm total length) generally increased predation on the blue crab, which supports a valuable fishery. Intense harvest of smaller length-classes and protection of larger Blue Catfish yielded outcomes in which trophy fish abundance increased and blue crab predation declined compared to baseline conditions. However, these outcomes were generally associated with lower Blue Catfish yields after 25 years. There were zero scenarios in which the fishery yield increased and blue crab predation decreased after 25 years. Policies limiting the harvest of small Blue Catfish resulted in large population abundances, suggesting that reducing the abundance of small fish could be important for reducing impacts on native species.

    Conclusions

    This study supports the importance of management planning to develop objectives and performance measures based on an improved understanding of trade-offs associated with harvest management for a nonnative fish with economic value.

    Identifying strategies to manage boreal forests: Simulating moose and timber management scenarios at a landscape scale in the face of changing environmental conditions

    Released April 01, 2025 09:15 EST

    2025, European Journal of Forest Research

    Nathan R. De Jager, Wiebke Neumann, Miguel M. Girona, Joakim Hjältén, Anouschka R. Hof

    There are ongoing debates among different stakeholders about which forest and ungulate management strategies will sustain high levels of timber and animal harvest and maintain important ecosystem functions under climate change. Ungulate-forest interactions are complex, including periods where forest regeneration is sensitive to browsing pressure, making it difficult to predict the consequences of a given strategy over time. To aid decision-making, we simulated the impacts of moose browsing on forest succession under 18 different combinations of moose (Alces alces) harvest rate levels and forest management scenarios in a boreal forest landscape in southern Sweden given projected changes in forest growth due to climate change. We found that the current management practices are important for sustaining a moose-forest system. Increasing moose harvest rates led to slightly smaller moose populations, larger estimates of landscape carrying capacity, and less biomass removal of Scots pine (Pinus sylvestris), a commercially valuable species. However, minor changes in the moose harvest were hardly affecting timber production. Increasing the timber harvest rotation time led to the highest estimates of Scots pine biomass, while thinning younger cohorts lead to the highest estimates of Norway spruce (Picea abies) biomass. These changes came without much effect to moose population dynamics. However, the increased broadleaf production scenario had a very large positive effect on total aboveground live biomass of deciduous species and on landscape carrying capacity and moose density. This scenario subsequently resulted in the greatest estimates of biomass removal of Scots pine, highlighting the tradeoffs associated with increased moose production.

    Uncertainty reduction for subaerial landslide-tsunami hazards

    Released April 01, 2025 08:03 EST

    2025, Journal of Geophysical Research: Earth Surface (130)

    Katherine R. Barnhart, David L. George, Andrew L. Collins, Lauren N. Schaefer, Dennis M. Staley

    Subaerial rock slopes may generate a tsunami by rapidly moving into the water. Large uncertainty in landslide characteristics propagates into large uncertainty in tsunami hazard, making hazard assessment more difficult for land and emergency managers. Once a potentially tsunamigenic landslide is identified, it may not be clear which landslide characteristics contribute most significantly to uncertainty in the tsunami hazard. Our aim is to document the relative worth of different landslide characteristics (e.g., size, material properties) for reducing uncertainty in landslide-tsunami hazard assessments. Isolating the relative importance of specific landslide characteristics may inform prioritization of data collection and improve efficiency in understanding hazard. To accomplish this, we generated a set of 288 landslide-tsunami simulations in which we systematically varied the size and material properties of possible failure extents at the Barry Arm landslide complex in northwestern Prince William Sound, Alaska, USA. We find that for landslides smaller than the receiving waterbody, the landslide volume has the strongest effect on resulting wave characteristics and thus the highest leverage on reducing uncertainty in tsunami hazard. In contrast, for landslides substantially larger than the waterbody, the duration of rapid movement of the landslide has the highest leverage. Based on our results, we propose a classification scheme for subaerial landslides based on the relative size of the landslide and waterbody. Additionally, our results support the generation of a tsunami height transfer function between existing tide gages and a nearby coastal city. These results have direct implications for the practice of operational early warning.

    Evaluating the applicability of the generalized power-law rating curve model: With applications to paired discharge-stage data from Iceland, Sweden, and the United States

    Released April 01, 2025 08:00 EST

    2025, Journal of Hydrology (651)

    Rafael Daniel Vias, Birgir Hrafnkelsson, Timothy O. Hodson, Sölvi Rögnvaldsson, Axel Örn Jansson, Sigurdur M. Gardarsson

    Hydrologic research and operations make extensive use of streamflow time series. In most applications, these time series are estimated from rating curves, which relate flow to some easy-to-measure surrogate, typically stage. The conventional stage-discharge rating takes the form of a segmented power law, with one segment for each hydrologic control at the stream gauge. However, these ratings are notoriously difficult to estimate with numerical methods, so that most are still developed manually. A few automated algorithms have emerged, but their use is sporadic, and their relative merits have not been rigorously assessed. One recently developed approach, the generalized power-law, avoids the segmenting problem by representing the power-law exponent as a Gaussian process. On the one hand, this representation is more flexible and easier to fit, but its flexibility might allow unrealistic solutions, so it needs to be tested under a range of conditions to assess its operational viability. This study evaluates the generalized power-law rating curve model by applying it to observations from 180 streams in Iceland, Sweden, and the United States. Overall, the model proved flexible and computationally robust, generating convincing rating curves across a range of geographic settings and was comparable to curves generated by a segmented rating model. Lastly, we propose a model-selection algorithm based on information theory to help identify the best rating curve model for a particular stream gauge.

    Monitoring lava lake fluctuations and crater refilling with continuous laser rangefinders

    Released March 31, 2025 10:10 EST

    2025, Journal of Applied Volcanology (14)

    Edward F. Younger, William Tollett, Matthew R. Patrick

    The U.S. Geological Survey’s Hawaiian Volcano Observatory (HVO) has developed a new method to continuously monitor lava lake elevations. Since 2018, HVO has stationed a laser rangefinder on Kīlauea’s caldera rim. The instrument automatically measures lava lake elevation each second, with centimeter accuracy. A stream of elevation data flows to HVO’s database and public website, contributing a valuable channel to HVO’s volcano monitoring network. The data display is intuitive for users, providing essential information with a new level of clarity. HVO has used this method to track Kīlauea’s changing lava lake elevations over a series of eruptions, and the time series data show several volcanic processes: crater refilling, gas pistoning, lava lake surface behavior, and endogenous crater floor uplift. This technique is versatile, nimble, and easy to use. Continuous laser rangefinders may also prove useful for tracking lava lakes elsewhere, and for monitoring other hazards such as growing lava domes and debris flows.

    Patterns of water-extractable soil organic matter in the US Great Plains: Insights from the Haas Soil Archive

    Released March 31, 2025 10:01 EST

    2025, Agrosystems, Geosciences & Environment (8)

    Jonathan J. Halvorson, Angela Hansen, Catherine E. Stewart, Mark A. Liebig

    Novel approaches that are fast and sensitive are needed to evaluate soil change and integrate soil ecosystem properties. Carbon (C) and nitrogen (N) extracted from soil with water are associated with plant nutrients and microbial activity but information about change over time in the US Great Plains is sparse. We used cool (20°C) and hot (80°C) water extracts from historic (1947) and contemporary (2018) soil samples collected at Moccasin, MT; Akron, CO; and Big Spring, TX; to examine changes to labile C and N and optical properties after 71 years of dryland cropping. Concentrations of C and N extracted with cool water decreased between 1947 and 2018 in surface (0–15.2 cm) samples from Moccasin, by 52% and 35%, and Big Spring, by 37% and 32%, but remained unchanged at Akron. Conversely, net (hot−cool) extractable C did not change at Moccasin or Big Spring but increased at Akron by 26%. Net extractable N decreased at Moccasin by 22% but did not change elsewhere. Sequential principal component analysis and stepwise discriminant analysis identified three important optical properties. Values of SUVA254 (where SUVA254 is the specific ultraviolet absorbance at 254 nm) in extracts did not change at Moccasin between 1947 and 2018 but increased at Akron, indicating increased aromaticity. Conversely, SUVA254 decreased at Big Spring. Values for Sag350–400 (where Sag350–400 is the slope from a nonlinear fit of an exponential function to the absorption spectrum over the wavelength range from 350 to 400 nm), inversely related to extract molecular weight and aromaticity, decreased at Moccasin but not elsewhere. The proportion of recalcitrant to labile compounds, C:T (where C:T is the ratio of fluorescence intensity from Peak C [ex340/em440] to Peak T [ex275/em340]), increased in extracts from all sites but especially at Akron. Together, these methods provided insights into soil change while conserving samples.

    Complex staged emplacement of a basaltic lava: The example of the July 1974 flow of Kīlauea

    Released March 31, 2025 09:21 EST

    2025, Bulletin of Volcanology (87)

    Sebastian Biass, Bruce F. Houghton, Ed W Llewellin, Kristine C Curran, Thorvaldur Thordarson, T. Orr, Carolyn Parcheta, Peter J. Mouginis-Mark

    Basaltic lava flows can be highly destructive. Forecasting the future path and/or behavior of an active lava flow is challenging because topography is often poorly constrained and lava has a complex rheology and emplacement history. Preserved lavas are an important source of information which, combined with observations of active flows, underpins conceptual models of lava flow emplacement. However, the value of preserved lavas is limited because pre-eruptive topography and, thus, syn-eruptive lava flow geometry are usually not known. Here, we use tree-mold data to constrain pre-eruptive topography and syn-eruptive lava flow geometry of the July 1974 flow of Kīlauea (USA). Tree molds, which are formed after advancing lava encloses standing trees, preserve the lava inundation height and the final preserved thickness of lava. We used data from 282 tree molds to reconstruct the temporal and spatial evolution of the ~ 2.1 km-long July 1974 flow. The tree mold dataset yields a detailed dynamic picture of staged emplacement, separated by intervals of ponding. In some ponded areas, flow depth during emplacement (~ 5 m) was twice the preserved thickness of the final lava (2–3 m). Drainage of the ponds led to episodic surges in flow advancement, decoupled from fluctuations in vent discharge rate. We infer that the final breakout occurred after the cessation of fountaining. Such complex emplacement histories may be common for pāhoehoe lavas at Kīlauea and elsewhere in situations where the terrain is of variable slope, and/or where lava is temporarily perched and stored.

    The GorDAS Distributed Acoustic Sensing experiment above the Cascadia locked zone and subducted Gorda Slab

    Released March 31, 2025 09:00 EST

    2025, Seismological Research Letters

    Jeffrey J. McGuire, Andrew Barbour, Connie Stewart, Victor Yartsev, Martin Karrenbach, Mark Hemphill-Haley, R.C. McPherson, Kari Stockdale, Clara Yoon, Theresa Marie Sawi

    The southernmost portion of the Cascadia Subduction zone in Northern California produces high rates of moderate and large earthquakes owing to subduction of the Gorda slab and deformation associated with the Mendocino Triple Junction. Distributed Acoustic Sensing (DAS) is rapidly advancing as a method for detecting earthquakes and imaging crustal structure. We have begun a long-term DAS monitoring experiment on buried telecom fiber in Arcata, California, with the goal of increasing the available recordings of moderate to large earthquakes as well as imaging seismogenic structures. We have recorded over a year's worth of data, including most aftershocks of the 2022 Mw6.4 Ferndale earthquake, though not the mainshock itself. The dataset includes numerous magnitude 3.5 and larger earthquakes including the 2023/01/01 Mw5.4 Rio Dell earthquake. Here we present initial results comparing an earthquake detection algorithm, run in real-time on the processing unit of the interrogator system, with both the ShakeAlert earthquake early warning system as well as a post-processed earthquake catalog developed with deep-learning phase-picker algorithms. The rapid onboard processing of the detector demonstrates the potential utility of DAS-based edge computing for earthquake early warning. We also verify the quality of the strain waveforms both in terms of peak amplitudes and waveform similarity using about five months of nodal seismometer data. These instruments were deployed roughly every 300 m along the ~15km long cable and validate large variations in peak strain over short distances that are seen in the DAS data. All data from time windows surrounding both the local and teleseismic earthquakes are publicly available, which will improve our understanding of both the performance of DAS systems in moderate earthquakes and earthquake hazards associated with the Gorda subduction zone.

    Assessment of western Oregon debris-flow hazards in burned and unburned environments

    Released March 30, 2025 07:56 EST

    2025, Earth Surface Processes and Landforms (50)

    Brittany Danielle Selander, Nancy C. Calhoun, William Burns, Jason W. Kean, Francis K. Rengers

    In the steep and mountainous environment of western Oregon, debris flows pose a considerable threat to property, infrastructure and life. Wildfire is commonly known to increase the susceptibility of steep slopes to debris flows, but the extent of this process in the western Cascades is not well understood. The US Geological Survey (USGS) currently estimates postfire debris-flow likelihood and triggering rainfall thresholds using a model calibrated to a southern California inventory of debris flows generated by excess runoff within the first year after fire. Because of a lack of available data, this model has not been tested in western Oregon, or in locations where postfire debris flows initiate via other mechanisms (e.g., shallow landslides or in-channel failures). Using repeat field observations and aerial imagery, we developed two new debris-flow inventories within and adjacent to the perimeters of five 2020 wildfires in western Oregon: Archie Creek, Holiday Farm, Beachie Creek, Lionshead and Riverside. The first inventory focuses on postfire debris flows (2020–2022); the second focuses on debris flows prior to fires (1995–2020). Our inventories of prefire and postfire debris flows were used to document initiation mechanisms in Oregon's western Cascades and to evaluate the effects of wildfire. We found that wildfire changed the distribution of debris-flow initiation mechanisms in the western Cascades. After the wildfires, annual rates of runoff-generated debris flows increased by 22% and the number of shallow landslide-initiated debris flows decreased by 17% relative to before the wildfires. Despite this shift, shallow landsliding was the dominant debris-flow initiation mechanism in both unburned and burned environments. We found the performance of the current USGS debris-flow likelihood model was degraded relative to other previously tested locations across the intermountain western United States. Our results highlight the need for improved postfire hazard assessment in western Oregon based on regional model calibration that is tuned to the dominant debris-flow initiation mechanisms.

    Understanding predator-prey-competitor dynamics between Lower Missouri River Macrhybopsis and Scaphirhynchus using a population—bioenergetics model ensemble

    Released March 29, 2025 07:49 EST

    2025, Ecological Modeling (504)

    Mark L. Wildhaber, Janice L. Albers, Nicholas S. Green

    The pallid sturgeon Scaphirhynchus albus is a long-lived, endangered fish in the Missouri River. Individuals become piscivorous as adults, so recruitment from stocking or reproduction could reduce populations of prey, including Macrhybopsis chubs. We constructed an individual- and age-based, multi-species, predator-prey-competitor model (IAMP) to represent the benthic community (sturgeons, chubs, and chironomids) of the Lower Missouri River (LMR) to explore scenarios of potential predator-prey-competitor dynamics. Our simulations suggest that chubs alone are unlikely able to support a level of LMR pallid sturgeon similar to historical or current populations. These simulations also suggest that adult pallid sturgeon may need to shift to non-chub prey fish to achieve the greater sizes observed in the Upper Missouri River. When annual hydrologic regimes were included, we found a negative relationship between chub relative abundance and previous year 30-day minimum flows. Inclusion of temporal environmental variability made it clear that large chub populations may be necessary to support LMR pallid sturgeon. When full stochasticity was included in the IAMP, chub population sizes needed to increase further to ensure continued reproduction and recruitment of both chubs and pallid sturgeon. These results support the hypothesis that the pallid sturgeon population in the Lower Missouri River may be food-limited. However, the full extent of this limitation and the management changes needed to address this will require more research on the biology and population dynamics of this fish community, on pallid sturgeon interactions with prey species, and on how sympatric species may be affected during the pallid sturgeon recovery process.

    A crustal thermal model of the conterminous U.S. constrained by multiple data sets: A Monte-Carlo approach

    Released March 28, 2025 10:31 EST

    2025, Geophysical Journal International (241) 1711-1724

    Siyuan Sui, Weisen Shen, Oliver S. Boyd

    The thermal structure of the continental crust plays a critical role in understanding its elastic and rheologic properties as well as its dynamic processes. Thermal parameter data sets on continental scales have been used to constrain the crustal thermal structure, including both the direct (e.g. temperature, heat flux and heat conductivity measured at the surface) and indirect (e.g. seismically derived Mohorovičić discontinuity (Moho) temperature, geomagnetically derived Curie depth) observations. In this study, we present a new continental scale crustal heat generation model with additional information from seismologically inferred crustal composition. Together with previous direct and indirect thermal parameter data sets in the conterminous United States, we use the new crustal heat generation model to construct a 3-D crustal temperature model under a newly developed Bayesian framework. Specifically, we first derive profiles of crustal heat generation based on an empirical geochemical relationship at 1683 locations where seismologically derived crustal composition information is available. Then for each of these locations, the average heat generation values in the upper, middle and lower crust are combined with other thermal parameters through a Markov Chain Monte-Carlo inversion for a conductive, vertically smooth temperature profile. The results, posterior distributions of temperature profiles, are used to generate a 3-D crustal thermal model with the uncertainties systematically assessed. The new temperature model overall exhibits similar patterns to that from the U.S. Geological Survey National Crustal Model, but also reduces possible biases and the model's dependence on a single thermal parameter.

    A generalized framework for inferring river bathymetry from image-derived velocity fields

    Released March 28, 2025 09:22 EST

    2025, Geomorphology (479)

    Carl J. Legleiter, Paul J. Kinzel

    Although established techniques for remote sensing of river bathymetry perform poorly in turbid water, image velocimetry can be effective under these conditions. This study describes a framework for mapping both of these attributes: Depths Inferred from Velocities Estimated by Remote Sensing, or DIVERS. The workflow involves linking image-derived velocities to depth via a flow resistance equation and invoking an optimization algorithm. We generalized an earlier formulation of DIVERS by: (1) using moving aircraft river velocimetry (MARV) to obtain a continuous, spatially extensive velocity field; (2) working within a channel-centered coordinate system; (3) allowing for local optimization of multiple parameters on a per-cross section basis; and (4) introducing a second objective function that can be used when discharge is not known. We also quantified the sensitivity of depth estimates to each parameter and input variable. MARV-based velocity estimates agreed closely with field measurements (R2=0.81) and the use of DIVERS led to cross-sectional mean depths that were correlated with in situ observations (R2=0.75). Errors in the input velocity field had the greatest impact on depth estimates, but the algorithm was not highly sensitive to initial parameter estimates when a known discharge was available to constrain the optimization. The DIVERS framework is predicated upon a number of simplifying assumptions — steady, uniform, one-dimensional flow and a strict, purely local proportionality between depth and velocity — that impose important limitations, but our results suggest that the approach can provide plausible, first-order estimates of river depths.

    A low-cost approach to monitoring streamflow dynamics in small, headwater streams using timelapse imagery and a deep learning model

    Released March 28, 2025 08:41 EST

    2025, Preprint

    Phillip J. Goodling, Jennifer Burlingame Hoyle Fair, Amrita Gupta, Jeffrey D Walker, Todd Dubreuil, Michael J Hayden, Benjamin Letcher

    Despite their ubiquity and importance as freshwater habitat, small headwater streams are under monitored by existing stream gage networks. To address this gap, we describe a low-cost, non-contact, and low-effort method that enables organizations to monitor streamflow dynamics in small headwater streams. The method uses a camera to capture repeat images of the stream from a fixed position. A person then annotates pairs of images, in each case indicating which image has more apparent streamflow or indicating equal flow if no difference is discernible. A deep learning modelling framework called Streamflow Rank Estimation (SRE) is then trained on the annotated image pairs and applied to rank all images from highest to lowest apparent streamflow. From this result a relative hydrograph can be derived. We found that our modelled relative hydrograph dynamics matched the observed hydrograph dynamics well for 11 cameras at 8 streamflow sites in western Massachusetts. Higher performance was observed during the annotation period (median Kendall’s Tau rank correlation 0.75 with range 0.6–0.83) than after it (median Kendall’s Tau 0.59 with range 0.34 – 0.74). We found that annotation performance was generally consistent across the eleven camera sites and two individual annotators and was positively correlated with streamflow variability at a site. A scaling simulation determined that model performance improvements were limited after 1,000 annotation pairs. Our model’s estimates of relative flow, while not equivalent to absolute flow, may still be useful for many applications, such as ecological modelling and calculating event-based hydrological statistics (e.g., the number of out-of-bank floods). We anticipate this method will be a valuable tool to extend existing stream monitoring networks and provide new insights on dynamic headwater systems.

    Multi-scale geophysical imaging of a hydrothermal system in Yellowstone National Park, USA

    Released March 28, 2025 08:12 EST

    2025, JGR Solid Earth (130)

    Sylvain Pasquet, W. Steven Holbrook, Bradley J. Carr, Neil C. Terry, Martin Briggs, Carol A. Finn, Paul A. Bedrosian, Esben Auken, Jesper Pedersen, Pradip Kumar Maurya, Kenneth Sims

    Little is known about the local plumbing systems that fuel Yellowstone’s famous hot springs, geysers and mud pots. A multi-method, multi-scale geophysical investigation was carried out in the Obsidian Pool Thermal Area (OPTA) to: (i) delineate the lateral extent of the hydrothermal area and associated surface features; (ii) estimate the dimensions of the upflow zone and identify its main controlling structures; (iii) assess fluids circulation pathways from depth to surface. Ground and airborne geophysical data were acquired to connect local and regional scales, from shallow to large depths. Maps of surface electrical resistivity show a strong correlation with hydrothermal features. At in-termediate depths, electrical resistivity permits delineating the upper limit of the upflow zone, while Poisson’s ratio highlights differences in subsurface fluid content. Combining these results with surface observations and topographic information, we speculate that differential mixing of hydrothermal and fresh water could explain the wide diversity of features observed at OPTA. Low electrical resistivity observed at large depths also suggest that a vast upflow zone, controlled by rhyolite flows and conjugate faults, underlies the OPTA. We speculate that hydrothermal fluids rise along fractures and reach the surface in topographic lows to form hydrothermal features. Our results show that synoptic, multi-scale geophysical measurements provide a roadmap for understanding where and how geologic heterogeneity, topography, fluid-gas separation, and the mixing of thermal and meteoric waters conspire to produce the wide variety of Yellowstone’s renowned hydrothermal features.

    Sulfate reduction drives elevated methylmercury formation in water column of eutrophic freshwater lake

    Released March 28, 2025 07:55 EST

    2025, Environmental Science and Technology (59) 6799-6811

    Benjamin D. Peterson, Sarah E. Janssen, Brett A. Poulin, Jacob M. Ogorek, Amber White, Elizabeth A. McDaniel, Robert A. Marick, Grace Jane Armstrong, Nicholas D. Scheel, Michael T. Tate, David P. Krabbenhoft, Katherine D. McMahon

    Mercury (Hg) contamination of aquatic food webs is controlled in part by the formation and accumulation of toxic and bioaccumulative methylmercury (MeHg). MeHg production is mediated by metabolically diverse microorganisms carrying the hgcAB gene pair, while the demethylation reaction is mediated by several biotic and abiotic processes. However, the relative importance of these two processes on MeHg accumulation and the environmental factors that influence them are poorly characterized, especially in eutrophic environments. In this study, both Hg methylation and MeHg demethylation in a eutrophic freshwater lake were linked to ambient MeHg concentrations and hgcA abundance and expression. High methylation rate potentials indicated in situ MeHg formation was a key source of MeHg to the water column, driven by high hgcA abundance and transcription. Molybdate treatment decreased methylation rate potentials, highlighting the importance of sulfate reduction in driving MeHg formation. Sulfate-reducing bacteria accounted for over 50% of the hgcA gene transcription, despite representing less than 10% of the hgcA-carrying microbial community. An arsR-like transcriptional regulator preceded many hgcA sequences; these were transcriptionally active and linked to lower hgcA expression. Overall, this study elucidates the microbial and biogeochemical processes that influence the in situ formation of MeHg in understudied eutrophic freshwater environments.

    A partnership between the USGS and the Klamath Tribes to apply structured decision making for chronic wasting disease management

    Released March 27, 2025 14:00 EST

    2025, Fact Sheet 2025-3012

    Margaret C. McEachran, Katie M. Guntly-Yancey, Richard E.W. Berl, Donald Gentry, Michael C. Runge, Carl White, Jonathan D. Cook

    Project Overview: The Klamath Tribes (TKT) are the Klamath, Modoc, and Yahooskin Paiute peoples, and are the first peoples of the land, having lived in ancestral lands of Oregon and California since time immemorial. Members of TKT have rights to hunt, fish, trap, and gather, including the harvest of mule deer (Odocoileus hemionus) and elk (Cervus canadensis nelsoni) within the 1.19 million acres of their Reserved Treaty Rights Area.

    Anthropogenic changes threaten the well-being of mule deer and elk and of the Tribes that rely on them. Today, these species are a primary protein source for TKT. They are traded within TKT and among other Tribes and provide materials for cultural and sacred items such as regalia. However, mule deer numbers have been declining across the western states for the past several decades because of multiple stressors, including persistent and frequent drought and wildfires, habitat loss and degradation, vehicle mortality, and increasing barriers to migratory movements between summer and winter ranges. The migratory movements of mule deer, which allow deer to access the best available seasonal habitats, put them at risk of another potential stressor—infection with chronic wasting disease (CWD). Chronic wasting disease is a fatal prion disease of deer that has been detected in 36 U.S. states. It was detected in free-ranging mule deer in northern Idaho in 2021, prompting the Tribes to initiate a planning process for CWD surveillance, prevention, and response measures to preserve and protect the deer and elk within the Reserved Treaty Rights Area.

    In 2023, the Klamath Tribes Natural Resources Department began to develop their CWD plan by incorporating preliminary input provided by the Klamath Indian Game Commission (KIGC) and working with scientists from the U.S. Geological Survey (USGS). This collaborative effort includes the application of structured decision making and the development of mathematical models to analyze potential CWD management strategies. The result will be a transparent assessment that incorporates TKT values throughout the process and can inform place-based management of the cultural, natural, and physical resources upon which the Tribes depend. In addition, this process may provide opportunities for broader coordination by natural resource management agencies to work together to ensure the long-term health and sustainability of deer and elk populations within the Reserved Treaty Rights Area and throughout the state of Oregon.

    A trend analysis and model comparison of total phosphorus concentrations and loads in the Boise River near Parma, southwestern Idaho, water years 2003–21

    Released March 27, 2025 11:37 EST

    2025, Scientific Investigations Report 2024-5110

    Tyler V. King, Alysa M. Yoder

    Total phosphorus (TP) concentrations and loads in the Boise River near Parma, Idaho, were examined to identify changes by month over a 19-year period from water year 2003 through water year 2021 and to evaluate the performance of three common water-quality models. Mean annual TP concentrations and loads were estimated to have reduced by approximately 60 percent over the study period. Mean annual TP concentrations were reduced from 0.42 milligrams per liter in 2003 to 0.18 milligrams per liter in 2021. Mean annual TP loads were reduced from 816 kilograms per day in 2003 to 302 kilograms per day in 2021. Mean annual concentrations and loads reduced by approximately 3 percent per year with the largest changes occurring in the non-irrigation season of October through April. The TP load remained highest in May across the model period while peak concentration shifted from January to March.

    High-frequency TP data collected with an automated sampler every 49 hours enabled detailed model performance evaluation of the Load Estimator (LOADEST), Weighted Regressions on Time, Discharge, and Season (WRTDS), and WRTDS method with Kalman filtering (WRTDS_K) water-quality models generated with near-monthly data. All three models were generally able to reproduce the observed concentrations, with the largest errors occurring in the spring when observed concentrations were most variable. Annual TP loads varied by up to 27 percent, or approximately 128,000 kilograms, between the three models calibrated on monthly data. In this system with highly variable concentrations, we note that performance metrics for WRTDS_K based on monthly calibration data masked serious errors that were only revealed by comparing results against higher frequency (49-hour) autosampler data. This emphasizes the value of high frequency validation data to quantify uncertainty in water-quality models when applied to systems where concentrations change rapidly. Lastly, we identify that hydraulic routing may be a valuable addition to discharge, season, and time in water-quality modeling for systems with significant human intervention in natural hydro-biogeochemical processes.

    System characterization report on Resourcesat-2A Linear Imaging Self Scanning-4 sensor

    Released March 27, 2025 11:18 EST

    2025, Open-File Report 2021-1030-U

    Mahesh Shrestha, Aparajithan Sampath, Minsu Kim, Seonkyung Park, Jeffrey Clauson

    Executive Summary 

    This report documents the system characterization of the Indian Space Research Organisation Resourcesat-2A Linear Imaging Self Scanning-4 (LISS–4) sensor. It is part of a series of system characterization reports produced by the U.S. Geological Survey Earth Resources Observation and Science Cal/Val Center of Excellence. These reports describe the methodology and procedures used for characterization, present technical and operational information about the specific sensing system being evaluated, and provide a summary of test measurements, data retention practices, data analysis results, and conclusions.

    Resourcesat-2A was launched in 2016 on the Polar Satellite Launch Vehicle-C36; it is identical to Resourcesat-2, and together, they decrease imaging revisit time from 5 days to 2–3 days, providing data continuity and improved temporal resolution. Resouresat-2 and 2A carry the Advanced Wide Field Sensor, Linear Imaging Self Scanning-3, and LISS–4 medium-resolution imaging sensors, continuing the legacy of the Indian Space Research Organisation’s Indian Remote Sensing-1C/1D/P3 satellite programs. More information about the Indian Space Research Organisation’s satellites and sensors is available through the Joint Agency Commercial Imagery Evaluation Earth Observing Satellites Online Compendium at https://calval.cr.usgs.gov/apps/compendium/ and from the manufacturer at https://www.isro.gov.in/.

    The Earth Resources Observation and Science Cal/Val Center of Excellence system characterization team assessed the geometric, radiometric, and spatial performances of the Resourcesat-2A LISS–4 sensor. Geometric performance is divided into the interior geometric performance of band-to-band registration and the exterior geometric performance of geolocation accuracy. The interior geometric performance had mean offsets in the range of −0.118 to 0.024 pixel in easting and −0.053 to 0.022 pixel in northing with root mean square error values from 0.067 to 0.230 pixel in easting and from 0.087 to 0.2 pixel in northing. The exterior geometric performance had offsets in the range of 2.55 to 7.85 meters (m) in easting and −6.15 to 11.15 m in northing with root mean square error values in the range of 2.6 to 8.2 m in easting and 6.35 to 11.8 m in northing compared to the U.S. Department of Agriculture National Agriculture Imagery Program and WorldView-3 orthoimages. The measured radiometric performance had offsets from 0.003 to 0.024 and slopes from 0.736 to 0.952, and spatial performance was in the range of 1.633 to 1.903 pixels for the full width at half maximum with a modulation transfer function at a Nyquist frequency in the range of 0.0529 to 0.0952.

    Nitrate loads and concentrations from forested watersheds and implications for Long Island Sound

    Released March 27, 2025 10:04 EST

    2025, JGR Biogeosciences (130)

    Alana B. Spaetzel, James B. Shanley, Leslie A. DeSimone, John R. Mullaney

    Reduction in point sources of nitrogen has led to improvement in water quality of the Long Island Sound (LIS) since 2000, but changes in nonpoint sources are less clear. A significant yet poorly quantified nonpoint nitrogen source is the forested landscape. Because a large proportion of the LIS basin is forested, even small areal inputs from the forested landscape have a large cumulative effect on nitrogen loading to LIS. Atmospheric nitrogen deposition, the primary source of nitrogen to forested landscapes in LIS basin, has been declining for several decades. However, nitrogen export in streams does not necessarily mirror nitrogen deposition. To assess forest nitrogen export to LIS, we estimated annual average concentrations and fluxes of nitrate in 17 forested watersheds in and near the LIS basin. Average flow-normalized nitrate-nitrogen concentrations ranged from less than 0.05–0.43 mg per liter among all sites; annual flow-normalized yields ranged from 0.45 to 4.3 kg per hectare. Flow-normalized annual average concentrations and yields of nitrate between water years 1991–2021 did not monotonically increase or decrease at most watersheds. Where determined, the other major N species generally had comparable magnitude and trends. Based on the watersheds analyzed in this study, forested areas are not responding uniformly to the continued decline of atmospheric nitrogen deposition. The variability among sites may indicate that local-scale factors exert substantial influence over the magnitude and trends in nitrogen exports. One watershed that had increasing development showed an increasing trend in nitrate, but not in dissolved organic nitrogen.

    Reconstructing relative abundance indices for Atlantic sturgeon using hierarchical ecological models

    Released March 27, 2025 09:34 EST

    2025, Transactions of the American Fisheries Society

    Daniel S. Stich, Dewayne Fox, Amanda Higgs, David C. Kazyak, Richard Pendleton, Suresh A Sethi

    Objective

    The Atlantic Sturgeon Acipenser oxyrinchus is a wide-ranging, long-lived diadromous fish that is endangered in most of its range. Our objective was to develop and apply long-term, detection-corrected indices of relative abundance for juvenile and adult Atlantic Sturgeon in the Hudson River, New York, United States, to support population monitoring and stock assessment.

    Methods

    We used long-term gill-net catches to estimate relative abundances of juvenile and adult Atlantic Sturgeon while accounting for imperfect detection within an N-mixture modeling framework. We validated the model framework using a simulation–estimation framework based on mean parameter estimates from the adult Atlantic Sturgeon relative abundance index.

    Results

    Simulation testing indicated that absolute abundance estimates may be biased low due to poor characterization of detection probabilities. However, model estimates of relative abundance tracked simulated abundance trends well. Juvenile relative abundance estimates followed similar trends as raw gill-net catches but were less variable among years when corrected for detection probability. Relative abundance of juveniles increased from 2004 to 2015 prior to declining through 2022, with little evidence for change between the start and end of the survey. Detection-corrected indices for adult sturgeon indicated a consistent increase in relative abundance that was not readily apparent in raw catch indices.

    Conclusions

    Detection-corrected catch indices can provide improved characterization of Atlantic Sturgeon relative abundance dynamics over raw gill-net catches through use of N-mixture models. The approach has broad applicability to data types that are commonly collected for understanding population trends in stock assessment. Estimation of absolute abundance and other population demographics germane to management would benefit from alternative or auxiliary data collected through approaches such as side-scan sonar or acoustic telemetry, which are increasingly common for monitoring sturgeon populations.

    Too much and not enough data: Challenges and solutions for generating information in freshwater research and monitoring

    Released March 27, 2025 09:27 EST

    2025, Ecosphere (16)

    Adrianne P. Smits, Ed K Hall, Bridget Deemer, Facundo Scordo, Carolina C. Barbosa, Stephanie M. Carlson, Kaelin M Cawley, Hans-Peter Grossart, Patrick T. Kelly, Stefano Mammola, Matthew R. Pintar, Caleb J. Robbins, Albert Ruhi Vidal, Mattia Sacco

    Evaluating progress toward achieving freshwater conservation and sustainability goals requires transforming diverse types of data into useful information for scientists, managers, and other interest groups. Despite substantial increases in the volume of freshwater data collected worldwide, many regions and ecosystems still lack sufficient data collection and/or data access. We illustrate how these data challenges result from a diverse set of underlying mechanisms and propose solutions that can be applied by individuals or organizations. We discuss creative approaches to address data scarcity, including the use of community science, remote-sensing, environmental sensors, and legacy datasets. We highlight the importance of coordinated data collection efforts among groups and training programs to improve data access. At the institutional level, we emphasize the power of prioritizing data curation, incentivizing data publication, and promoting research that enhances data coverage and representativeness. Some of these strategies involve technological and analytical approaches, but many necessitate shifting the priorities and incentives of organizations such as academic and government research institutions, monitoring groups, journals, and funding agencies. Our overarching goal is to stimulate discussion to narrow the data disparities hindering the understanding of freshwater processes and their change across spatial scales.

    Overwinter and prespawning movements by a vulnerable freshwater pelagophilic minnow

    Released March 27, 2025 09:08 EST

    2025, Scientific Reports (15)

    Desiree M. Moore, Shannon K. Brewer

    The decline of pelagophil minnows is related to river fragmentation across the southern Great Plains landscape. Because we know little about pelagophil movement patterns and timing, we aimed to quantify the movements of the vulnerable Arkansas River shiner (ARS) during the winter (November–March) and prespawning (April–June) seasons. We tagged 4233 ARS using visible implant elastomer, passive integrated transponder, or p-Chip micro-transponder tags in 2018–2020. We sampled to recapture tagged fish weekly during the winter and biweekly during the spring. Tagged fish exhibited a downstream movement bias and movement was weakly related to increasing temperature, discharge, and photoperiod during winter, however most of the variability was explained by a random individual effect. Larger individuals moved greater distances than smaller fish. Upstream movements by a migratory portion of the population appeared to begin around late February based on the presence of fish at previously unoccupied sites. However, the first long-distance (30-km) upstream movement by a tagged fish was documented in late May. We show evidence that some ARS may be resident fish at sites throughout winter and spring of multiple years. To conserve freshwater pelagophil minnows, our results indicate water management strategies improving river connectivity in late winter through the spawning season may benefit spawning by migratory individuals, whereas lateral connectivity might benefit the resident portion of the population. Research efforts under experimental flows could provide insight to improved recovery options.

    Limited directional change in mountaintop plant communities over 19 years in western North America

    Released March 27, 2025 08:15 EST

    2025, Ecosphere (16)

    Kaleb Goff, Meagan Ford Oldfather, Jan Nachlinger, Brian Smithers, Michael Koontz, Catie Bishop, Jim Bishop, Mary Burke, Seema Sheth

    Plant communities on mountain summits are commonly long-lived, cold-adapted perennials with low dispersal ability. These characteristics in tandem with limited area to track suitable conditions make these mountain communities potentially highly vulnerable to climate change, and indicators of climate change impacts. We investigated temporal changes in plant communities on 29 arid mountain summits across eight study regions in California and Nevada, USA, over 19 years. We analyzed community dynamics in terms of species richness, turnover, gain and loss of functional groups, and relative abundance of functional groups. First, across all summits and regions, we found no change in species richness over time. Second, there was relatively high species turnover (21.7%) between the five-year survey intervals, but turnover was not significantly different from random expectation. Within functional groups, forbs had the greatest proportion of gains and cushions had the greatest proportion of losses. Third, qualitative abundance categories presented a small but consistent signal of decrease in the relative abundance of cushions, graminoids, and shrubs/trees over the study period. Across a broad geographic scale and nearly two decades, community patterns were widely similar, suggesting that climate change has not impacted local colonization or extirpation of mountaintop species in this arid region. These findings support observed differences in response to climate change between temperature-limited and water-limited regions globally, and highlight the lagged and variable nature of high-elevation systems. Our findings fill a major data gap on alpine plant community responses to climate change in the western United States and bolster the importance of long-term ecological monitoring with rapid climate change.